Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03r
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.064
SB_24284| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_51039| Best HMM Match : OAR (HMM E-Value=0.92)                      31   0.79 
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                30   1.8  
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                30   1.8  
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                30   1.8  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   30   1.8  
SB_14388| Best HMM Match : VHS (HMM E-Value=1.8)                       30   1.8  
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)                 30   1.8  
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)                      29   4.2  
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 28   9.7  

>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 18/68 (26%), Positives = 37/68 (54%)
 Frame = -1

Query: 642 KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 463
           +S  +R+ + +   Q +N + +NL    +  +K+ NP+  ++   +N+ RKP  +S LK 
Sbjct: 120 RSRQRRRHQSLPRKQQRNPLPKNLLPKNLLPRKLQNPSLQRSQPPRNLRRKPPPRSPLKR 179

Query: 462 LTKNTVNP 439
             ++ V P
Sbjct: 180 PPRSKVLP 187


>SB_24284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
 Frame = -1

Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625
           KRRKE RAT        R+IA   T    E++   R K K  Q   + I+  + +    R
Sbjct: 23  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKEILQNTGERFKNR 79

Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
           K KK ++ + K+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 80  KSKKRVTDKAKD----KLPQTPEKKAEVLETLINSPRTRKTLSRQGVVKTPEEEKESNTL 135


>SB_51039| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 545

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 30/110 (27%), Positives = 52/110 (47%)
 Frame = -1

Query: 774 KRRKENRATRKIASRPTVP*SEKMNN*R*KPKQNTVRIIMPQS*KSIMKRKVKKVLSHQV 595
           KRRKE RAT    +R  +    ++   + K +  T   I+  + +    R  KK ++ +V
Sbjct: 66  KRRKEQRAT----AREELERKRQIAREKGKGRTRTGEKILQNTGERFKNRTSKKRVTDKV 121

Query: 594 KNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
           K+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 122 KD----KLPQTPEKKAEVLEALINSPRTRKILSRQGVVKTPEEEKESNTL 167


>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
 Frame = -1

Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625
           KRRKE RAT        R+IA   T    E++   R K K  Q   + I+  + +    R
Sbjct: 66  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 122

Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
             KK ++ +VK+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 123 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 178


>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 838

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
 Frame = -1

Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625
           KRRKE RAT        R+IA   T    E++   R K K  Q   + I+  + +    R
Sbjct: 66  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 122

Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
             KK ++ +VK+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 123 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 178


>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
 Frame = -1

Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625
           KRRKE RAT        R+IA   T    E++   R K K  Q   + I+  + +    R
Sbjct: 66  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 122

Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
             KK ++ +VK+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 123 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 178


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 478 LHGGLPHYVFLRVILQLIRIQNFLFLHGCFR*VSLHEI 591
           LHGG  H+V L V+  + R   +L  +G  + +++ E+
Sbjct: 515 LHGGCEHFVLLSVVYSIARTSPYLNANGVAKGITIPEL 552


>SB_14388| Best HMM Match : VHS (HMM E-Value=1.8)
          Length = 145

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
 Frame = -1

Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625
           KRRKE RAT        R+IA   T    E++   R K K  Q   + I+  + +    R
Sbjct: 23  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 79

Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
             KK ++ +VK+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 80  TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 135


>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
          Length = 956

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
 Frame = -1

Query: 774  KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625
            KRRKE RAT        R+IA   T    E++   R K K  Q   + I+  + +    R
Sbjct: 752  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 808

Query: 624  KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
              KK ++ +VK+     LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 809  TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 864


>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 633 MKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKN 502
           MKRK  K  + + KN+  +N+    MK K +   N    + K N
Sbjct: 71  MKRKNMKTKNMETKNVKTKNMKTKDMKTKNIKTKNNTTKNMKTN 114


>SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 806

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
 Frame = -1

Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPKQNTVRIIMPQS*KSIMKRKV 619
           KRRKE RAT        R+IA   T    E++   R K K+   +    ++ K+  +R  
Sbjct: 88  KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQ--EKKNLKNTGERFK 142

Query: 618 KKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445
            +    +V + +K  LP+T  KK +VL        T+K + R+  +K+  +    NT+
Sbjct: 143 NRTSKKRVTDKVKDKLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 200


>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -1

Query: 642 KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 463
           K  MK+K K+    +  +  K ++ K  M+K +    +  K+H  K+  +K  M   +  
Sbjct: 504 KDHMKKKHKRKDQKRKYHKRKDHMGKDHMRKDQKRKNHMRKDHMNKDNTKKDYMDRYIPQ 563

Query: 462 LTKNTVN 442
           +T + +N
Sbjct: 564 ITSHKLN 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,555
Number of Sequences: 59808
Number of extensions: 268505
Number of successful extensions: 732
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)