BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l03r (777 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064 SB_24284| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45 SB_51039| Best HMM Match : OAR (HMM E-Value=0.92) 31 0.79 SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 1.8 SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 1.8 SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 1.8 SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37) 30 1.8 SB_14388| Best HMM Match : VHS (HMM E-Value=1.8) 30 1.8 SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) 30 1.8 SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_53232| Best HMM Match : OAR (HMM E-Value=0.92) 29 4.2 SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 28 9.7 >SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 212 Score = 35.1 bits (77), Expect = 0.064 Identities = 18/68 (26%), Positives = 37/68 (54%) Frame = -1 Query: 642 KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 463 +S +R+ + + Q +N + +NL + +K+ NP+ ++ +N+ RKP +S LK Sbjct: 120 RSRQRRRHQSLPRKQQRNPLPKNLLPKNLLPRKLQNPSLQRSQPPRNLRRKPPPRSPLKR 179 Query: 462 LTKNTVNP 439 ++ V P Sbjct: 180 PPRSKVLP 187 >SB_24284| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 247 Score = 32.3 bits (70), Expect = 0.45 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625 KRRKE RAT R+IA T E++ R K K Q + I+ + + R Sbjct: 23 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKEILQNTGERFKNR 79 Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 K KK ++ + K+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 80 KSKKRVTDKAKD----KLPQTPEKKAEVLETLINSPRTRKTLSRQGVVKTPEEEKESNTL 135 >SB_51039| Best HMM Match : OAR (HMM E-Value=0.92) Length = 545 Score = 31.5 bits (68), Expect = 0.79 Identities = 30/110 (27%), Positives = 52/110 (47%) Frame = -1 Query: 774 KRRKENRATRKIASRPTVP*SEKMNN*R*KPKQNTVRIIMPQS*KSIMKRKVKKVLSHQV 595 KRRKE RAT +R + ++ + K + T I+ + + R KK ++ +V Sbjct: 66 KRRKEQRAT----AREELERKRQIAREKGKGRTRTGEKILQNTGERFKNRTSKKRVTDKV 121 Query: 594 KNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 K+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 122 KD----KLPQTPEKKAEVLEALINSPRTRKILSRQGVVKTPEEEKESNTL 167 >SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) Length = 929 Score = 30.3 bits (65), Expect = 1.8 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625 KRRKE RAT R+IA T E++ R K K Q + I+ + + R Sbjct: 66 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 122 Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 KK ++ +VK+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 123 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 178 >SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) Length = 838 Score = 30.3 bits (65), Expect = 1.8 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625 KRRKE RAT R+IA T E++ R K K Q + I+ + + R Sbjct: 66 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 122 Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 KK ++ +VK+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 123 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 178 >SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) Length = 929 Score = 30.3 bits (65), Expect = 1.8 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625 KRRKE RAT R+IA T E++ R K K Q + I+ + + R Sbjct: 66 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 122 Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 KK ++ +VK+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 123 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 178 >SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37) Length = 1041 Score = 30.3 bits (65), Expect = 1.8 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 478 LHGGLPHYVFLRVILQLIRIQNFLFLHGCFR*VSLHEI 591 LHGG H+V L V+ + R +L +G + +++ E+ Sbjct: 515 LHGGCEHFVLLSVVYSIARTSPYLNANGVAKGITIPEL 552 >SB_14388| Best HMM Match : VHS (HMM E-Value=1.8) Length = 145 Score = 30.3 bits (65), Expect = 1.8 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625 KRRKE RAT R+IA T E++ R K K Q + I+ + + R Sbjct: 23 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 79 Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 KK ++ +VK+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 80 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 135 >SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) Length = 956 Score = 30.3 bits (65), Expect = 1.8 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPK--QNTVRIIMPQS*KSIMKR 625 KRRKE RAT R+IA T E++ R K K Q + I+ + + R Sbjct: 752 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQEKKILQNTGERFKNR 808 Query: 624 KVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 KK ++ +VK+ LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 809 TSKKRVTDKVKD----KLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 864 >SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 145 Score = 29.9 bits (64), Expect = 2.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -1 Query: 633 MKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKN 502 MKRK K + + KN+ +N+ MK K + N + K N Sbjct: 71 MKRKNMKTKNMETKNVKTKNMKTKDMKTKNIKTKNNTTKNMKTN 114 >SB_53232| Best HMM Match : OAR (HMM E-Value=0.92) Length = 806 Score = 29.1 bits (62), Expect = 4.2 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Frame = -1 Query: 774 KRRKENRAT--------RKIASRPTVP*SEKMNN*R*KPKQNTVRIIMPQS*KSIMKRKV 619 KRRKE RAT R+IA T E++ R K K+ + ++ K+ +R Sbjct: 88 KRRKEQRATAREELERKRQIAREKT---RERVRRYRQKNKEEQGQ--EKKNLKNTGERFK 142 Query: 618 KKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTV 445 + +V + +K LP+T KK +VL T+K + R+ +K+ + NT+ Sbjct: 143 NRTSKKRVTDKVKDKLPQTPEKKAEVLETLINSPRTRKILSRQGVVKTPEEEKESNTL 200 >SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) Length = 583 Score = 27.9 bits (59), Expect = 9.7 Identities = 16/67 (23%), Positives = 32/67 (47%) Frame = -1 Query: 642 KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 463 K MK+K K+ + + K ++ K M+K + + K+H K+ +K M + Sbjct: 504 KDHMKKKHKRKDQKRKYHKRKDHMGKDHMRKDQKRKNHMRKDHMNKDNTKKDYMDRYIPQ 563 Query: 462 LTKNTVN 442 +T + +N Sbjct: 564 ITSHKLN 570 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,170,555 Number of Sequences: 59808 Number of extensions: 268505 Number of successful extensions: 732 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 667 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 729 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2119930593 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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