Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03r
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63744-1|AAC47308.1|  572|Caenorhabditis elegans p21-activated k...    29   4.9  
U29612-10|AAA68805.2|  572|Caenorhabditis elegans P21-activated ...    29   4.9  
U29612-9|AAL65775.1|  569|Caenorhabditis elegans P21-activated k...    29   4.9  
D83215-1|BAA11844.1|  569|Caenorhabditis elegans protein kinase ...    29   4.9  
Z49909-1|CAA90105.1|  298|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>U63744-1|AAC47308.1|  572|Caenorhabditis elegans p21-activated
           kinase CePAK protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 570 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTM 481
           P+ T KKK + NP   KN  KK    KP +
Sbjct: 38  PEATKKKKTMPNPFMKKNKDKKEASEKPVI 67


>U29612-10|AAA68805.2|  572|Caenorhabditis elegans P21-activated
           kinase family protein1, isoform a protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 570 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTM 481
           P+ T KKK + NP   KN  KK    KP +
Sbjct: 38  PEATKKKKTMPNPFMKKNKDKKEASEKPVI 67


>U29612-9|AAL65775.1|  569|Caenorhabditis elegans P21-activated
           kinase family protein1, isoform b protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 570 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTM 481
           P+ T KKK + NP   KN  KK    KP +
Sbjct: 38  PEATKKKKTMPNPFMKKNKDKKEASEKPVI 67


>D83215-1|BAA11844.1|  569|Caenorhabditis elegans protein kinase
           protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 570 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTM 481
           P+ T KKK + NP   KN  KK    KP +
Sbjct: 38  PEATKKKKTMPNPFMKKNKDKKEASEKPVI 67


>Z49909-1|CAA90105.1|  298|Caenorhabditis elegans Hypothetical
           protein C14A4.1 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 199 ALLHLLKCVRAFLFRYVHGYVLQRRADSFHVSLLRVRFLLHVQYAPVRHE 348
           AL   L C  + LFR+   YVL +         L+ R LL  +   VRHE
Sbjct: 197 ALAQGLYCEDSALFRHEVAYVLGQLQSPVATQELKDRLLLSTENCMVRHE 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,239,152
Number of Sequences: 27780
Number of extensions: 207389
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)