Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03r
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17660.1 68418.m02070 expressed protein contains Pfam profile...    28   7.9  
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va...    28   7.9  
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va...    28   7.9  
At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containi...    28   7.9  
At3g24230.1 68416.m03041 pectate lyase family protein similar to...    28   7.9  
At1g63200.1 68414.m07142 hypothetical protein                          28   7.9  

>At5g17660.1 68418.m02070 expressed protein contains Pfam profile
           PF02390: Putative methyltransferase
          Length = 312

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 537 NPNQLKNHTKKNIVRKPTMKSLLKHL 460
           +P+  K H K+ +V+KP + S+L++L
Sbjct: 208 DPHFKKRHQKRRVVQKPLVNSILQNL 233


>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
           variant 1 (SYN1) identical to SYN1 splice variant 1
           [Arabidopsis thaliana] GI:6453715
          Length = 617

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 630 KRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 463
           KRKV+  +   +++  + N+P T + +K    P QL     KN     T  S  +H
Sbjct: 314 KRKVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRH 369


>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
           variant 1 (SYN1) identical to SYN1 splice variant 1
           [Arabidopsis thaliana] GI:6453715
          Length = 627

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 630 KRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 463
           KRKV+  +   +++  + N+P T + +K    P QL     KN     T  S  +H
Sbjct: 324 KRKVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRH 379


>At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 691

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 VHGYVLQRRADSFHVSLLR 303
           +HG++L+R   SFH SL R
Sbjct: 12  LHGFILKRNLSSFHASLKR 30


>At3g24230.1 68416.m03041 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa]
          Length = 452

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 619 HFSFHDALLRLGHDDSH 669
           HF+ HD ++ LGH+DS+
Sbjct: 292 HFTHHDEVMLLGHNDSY 308


>At1g63200.1 68414.m07142 hypothetical protein
          Length = 216

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 621 VKKVLSHQVKNLMKRNLPKTTMKKKKV 541
           +KKV+   ++ ++K ++PK  +KK+K+
Sbjct: 180 IKKVVKRDIEQVVKSHVPKDVVKKQKL 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,244,828
Number of Sequences: 28952
Number of extensions: 181239
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)