Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03f
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   3.0  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    27   3.0  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   3.0  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   6.9  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    25   6.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   6.9  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   9.1  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 165 APSIAVAGSQLAQISAAPVGSVVPN 239
           APS    GS    ISAAP+ +++ N
Sbjct: 102 APSTTAMGSSSQNISAAPMANIISN 126


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 384 VYDENTGDHKTQHELSDGSVVRGGYSLIQPDGYIREVKYVADDLTGFNAVVKKFLPVNVE 563
           + DE T   KT  +LSD   +     L + + +I  ++ V DDL    +  K+ L  +V+
Sbjct: 93  ILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEKETLLNSVK 152

Query: 564 K-KIEQHE 584
           + K+  HE
Sbjct: 153 RAKVSYHE 160


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 189 SQLAQISA-APVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           SQL + S   P+   V NL+ PC +P ++  +   PA
Sbjct: 662 SQLVEASGNEPLPDFVVNLIQPCLSPALWDSKGNIPA 698


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 152 VFNWHYFSSALYEYFRE*STSYNINCGD 69
           VFN H++SS + E   + +  +NI+  D
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSD 225


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 57  FILGVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSV 230
           F   + AI+ +  ++   +++ GG +  P+ +     P+ AVA +Q +Q  A   GS+
Sbjct: 118 FNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVA-AQHSQHFAPWYGSI 174


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 141 PVEYLQYGAPSIAVAGSQ-LAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           P  +   G P   + G+  +  ++ +    V P +  P G P  +PG    PA
Sbjct: 495 PTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPA 547


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 238 FGTTDPTGAADIWAS-CDPATAIDGAP 161
           FG TD T A DIW++ C  A  + G P
Sbjct: 205 FGATDYTHAIDIWSTGCVMAELMLGHP 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,264
Number of Sequences: 5004
Number of extensions: 43418
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)