Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l03f
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0705 - 20846810-20848165 31 1.0
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 29 2.3
09_02_0106 + 4347024-4347536,4349619-4349700,4350499-4350747,435... 29 3.1
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 29 3.1
07_03_0704 + 20831071-20832381 29 3.1
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 29 4.1
09_04_0158 - 15197667-15198548,15201158-15201598 29 4.1
05_07_0334 - 29358823-29360247 28 7.1
05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634 28 7.1
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 27 9.4
>07_03_0705 - 20846810-20848165
Length = 451
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -1
Query: 238 FGTTDPTGAADIWASCDPAT---AIDGAPYCKYSTGTTSRPPCTNTL 107
F TG++ IW C P T A P+ S+ T S+ PC ++L
Sbjct: 103 FSVLADTGSSLIWTQCAPCTECAARPAPPFQPASSSTFSKLPCASSL 149
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 468 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPPCHE 614
+ D I DD++G AVVK+ V V K E+ E+ PD HE
Sbjct: 571 EDDDMIMSDTVAKDDMSGL-AVVKEETSVEVPVKNEEEEELKPDEIVHE 618
>09_02_0106 +
4347024-4347536,4349619-4349700,4350499-4350747,
4351594-4351646,4353064-4353159,4353289-4353423
Length = 375
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 489 EVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHP 596
E Y A+D+TG KF+ VN E+H+ P
Sbjct: 318 EGPYDAEDITGHTTDKTKFILVNYSNSSEEHKSQDP 353
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 259 VPHGATRFGT-TDPTGAADIWASCDPATAIDGAPYCKYSTGTTS 131
+P G R T P GAA W+ C PA A DG+ ++T S
Sbjct: 1 MPSGGRRLPPWTSPRGAAPRWSPCTPAGA-DGSGRAAHATPPAS 43
>07_03_0704 + 20831071-20832381
Length = 436
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 238 FGTTDPTGAADIWASCDPATAI---DGAPYCKYSTGTTSRPPCTNT 110
F TG+ IW C P T P+ S+ T S+ PCT++
Sbjct: 99 FSVVADTGSDLIWTQCAPCTKCFQQPAPPFQPASSSTFSKLPCTSS 144
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 489 EVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHP 596
E Y A+D+TG KF+ VN E+H P
Sbjct: 589 EGPYDAEDITGHTTDKTKFILVNYSNSSEEHNSQDP 624
>09_04_0158 - 15197667-15198548,15201158-15201598
Length = 440
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 277 PGYIQGVPHG-ATRFGTTDPTGAADIWASCDPATAIDGA 164
P Y+ G+P TR + P ADI A+C P + GA
Sbjct: 220 PSYLNGLPRPFVTRVYSVPPKLLADIKAACAPGVSTYGA 258
>05_07_0334 - 29358823-29360247
Length = 474
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 36 VNIFVAVFILGVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSI 176
VN F+AV + SA+ TG+ KV G + V V Y +G P +
Sbjct: 122 VNNFLAVLLGNRSAL---TGSGSGKVVASGPNDHVFVYYADHGGPGV 165
>05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634
Length = 369
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 165 APSIAVAGSQLAQISAAPVGSVVP-NLVAPCGTP 263
APS A+ +Q A+ AP + P APCGTP
Sbjct: 110 APSSAMPRAQGAEKKKAPSAAAPPPTRTAPCGTP 143
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 387 YDENTGDHKTQHELSDGSVVRGG 455
YD TGDH + ++ D +RGG
Sbjct: 280 YDTGTGDHYSLRQICDQEHIRGG 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,762
Number of Sequences: 37544
Number of extensions: 287163
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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