Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03f
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)                      29   2.4  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   7.3  
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)               28   7.3  
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)                       28   7.3  
SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.7  

>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 123 GGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPATT 302
           GG+ +   E     A +     + L + +AAP  +V+P   A  G+  + P  ++AP TT
Sbjct: 182 GGKSIAAQETTSASANTAPPGTTVLPESTAAPGSTVLPESTAAPGS-TVLPESTVAPGTT 240


>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
          Length = 524

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 69  VSAINVVTGASFSKVFVQGGREVVP-VEYLQYGAPSIAVAG 188
           V+AI ++TG+ FS VF+ G R   P + Y   G   +A +G
Sbjct: 198 VAAIRILTGSGFSAVFISGLRSNPPFLSYPLNGTQYLANSG 238


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 531 VVKKFLPVNVEKKIEQHEKSHPDP-PCHEVK 620
           V K+ +PV V +K EQH+ S  D  PCH ++
Sbjct: 161 VEKRLVPVAVWRKGEQHQISMEDVIPCHNIE 191


>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 772

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 518 CQIISYVFYFSNITIRLNKGVSSANH*PVTQLVLCFMITCVLIVH*I*IFVTGSVLFICD 339
           CQ  +YV + +N+T+ L     S     +    LC++    LI+  I I VT +++FI  
Sbjct: 345 CQGSTYVLFLTNVTLLLRPFSPSF----LIVAALCYIYCLHLIIVTITIIVTITIIFIAI 400

Query: 338 NYWN 327
            + N
Sbjct: 401 IFMN 404


>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
          Length = 585

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 123 GGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPATT 302
           GG+ +   E     A +     + L + +AAP  +V+P   A  G+  + P  + AP TT
Sbjct: 101 GGKSIAAQETTSASANTAPPGTTVLPESTAAPGSTVLPESTAAPGS-TVLPESTTAPRTT 159


>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
          Length = 906

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 468 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPP 605
           QPD    EV     D   F+A +++  P ++ + +E H K++P  P
Sbjct: 751 QPDSQQLEVFREEWDGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 796


>SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 468 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPP 605
           QPD    EV     D   F+A +++  P ++ + +E H K++P  P
Sbjct: 859 QPDSQQLEVFREEWDGMAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 904


>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
 Frame = +3

Query: 156 QYGAPSIAVAGSQLAQISAA---PVGSVVPNLVAPCGTPCIYPGQSIAPATTNXXXXXXX 326
           QYG  + +   +   Q +AA   P G    N      +   YP  S APA          
Sbjct: 292 QYGRKATSTDSTSHQQNNAASYSPQGKSDRNDQYNTDSYSTYPQASTAPALNINAGNPYR 351

Query: 327 XXXXXXNKEDAAGYEYSYLVYDENTGDHKT---QHELSDGSVVRGGYSLIQPDGY 482
                    + +GY     V D+N+ D +T   Q+  + G       SL Q  GY
Sbjct: 352 GSDQSGTSSEESGYAIKVSVQDDNSTDSQTPQAQNTQTQGYQNAADQSLQQSAGY 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,800
Number of Sequences: 59808
Number of extensions: 341522
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)