BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l03f (637 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z78066-2|CAB01524.2| 257|Caenorhabditis elegans Hypothetical pr... 32 0.30 Z68131-1|CAA92217.1| 467|Caenorhabditis elegans Hypothetical pr... 27 8.5 >Z78066-2|CAB01524.2| 257|Caenorhabditis elegans Hypothetical protein W06A7.4 protein. Length = 257 Score = 32.3 bits (70), Expect = 0.30 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +3 Query: 39 NIFVAVFILGVSAINVVTGASFSKVFVQGGREVVPVE-YLQYGAPSIAVAGSQLAQ-ISA 212 ++ +A+F+L S+I+ +TG + S+ + G VP+ L Y + + GS + I Sbjct: 3 HVGMAMFMLFASSISCLTGWAISRFGLFGVPSAVPMSILLNYNGIILLIVGSSIYPFIKV 62 Query: 213 APVGSVVPNLVAP 251 VGSV + V P Sbjct: 63 NVVGSVASDTVLP 75 >Z68131-1|CAA92217.1| 467|Caenorhabditis elegans Hypothetical protein B0395.2 protein. Length = 467 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -3 Query: 356 VLFICDNYWNTGLIRYYICSGRGY*LPRIYTGRSTWRD*IWY 231 V F C ++ + Y+I G + + R+ T RS W +W+ Sbjct: 381 VAFRC--FYPVMFVLYFIFGGTFFAVSRLITNRSAWNTALWF 420 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,849,411 Number of Sequences: 27780 Number of extensions: 253689 Number of successful extensions: 664 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 664 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1406256614 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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