Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03f
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical
           protein W06A7.4 protein.
          Length = 257

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +3

Query: 39  NIFVAVFILGVSAINVVTGASFSKVFVQGGREVVPVE-YLQYGAPSIAVAGSQLAQ-ISA 212
           ++ +A+F+L  S+I+ +TG + S+  + G    VP+   L Y    + + GS +   I  
Sbjct: 3   HVGMAMFMLFASSISCLTGWAISRFGLFGVPSAVPMSILLNYNGIILLIVGSSIYPFIKV 62

Query: 213 APVGSVVPNLVAP 251
             VGSV  + V P
Sbjct: 63  NVVGSVASDTVLP 75


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 356 VLFICDNYWNTGLIRYYICSGRGY*LPRIYTGRSTWRD*IWY 231
           V F C  ++    + Y+I  G  + + R+ T RS W   +W+
Sbjct: 381 VAFRC--FYPVMFVLYFIFGGTFFAVSRLITNRSAWNTALWF 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,411
Number of Sequences: 27780
Number of extensions: 253689
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)