Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03f
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    29   2.0  
At3g16200.1 68416.m02045 expressed protein                             29   2.6  
At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ...    28   6.0  
At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family...    28   6.0  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    27   7.9  

>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
 Frame = +3

Query: 66  GVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSVVPNLV 245
           G S+      AS S     G     P    Q+   S +   S L+Q S    GSV  NL 
Sbjct: 48  GSSSAAATPAASGSSSSSSGSASGKPAVTSQFARRSHSGELSGLSQTSPVKPGSVNRNLK 107

Query: 246 ------APCGTPCIYPGQSIAPATTN 305
                 A  GTP IY G   +P   N
Sbjct: 108 PGHRRSASAGTPLIYSGLGFSPVNNN 133


>At3g16200.1 68416.m02045 expressed protein
          Length = 452

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 387 YDENTGDHKTQHELSDGSVVRGG 455
           YD  TGDH +  ++ D S +RGG
Sbjct: 292 YDTGTGDHYSLRQICDQSHIRGG 314


>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
           sodium transporter AtHKT1 [Arabidopsis thaliana]
           gi|7716474|gb|AAF68393
          Length = 506

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -3

Query: 548 QELFDNRVKPCQIISYVFYFSNITIRLNKGVSSANH*PVTQLVLCFMITCVLIVH*I*IF 369
           Q L  N + PC ++  ++    IT R   G    NH  +    L  +  CVL+   +  F
Sbjct: 237 QVLMGNTLFPCFLVLLIWGLYKITKRDEYGYILKNHNKMGYSHLLSVRLCVLLGVTVLGF 296

Query: 368 VTGSVLFICDNYWNT 324
           +   +LF C   W +
Sbjct: 297 LIIQLLFFCAFEWTS 311


>At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family
           protein contains Pfam profile PF05721: Phytanoyl-CoA
           dioxygenase (PhyH); weak similarity to Phytanoyl-CoA
           dioxygenase, peroxisomal precursor (EC 1.14.11.18)
           (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
           oxidase) (Swiss-Prot:O14832) [Homo sapiens]
          Length = 283

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 259 VPHGATRFGTTDPTGAADIWASCDPATAIDG 167
           VPH    F  TDP     +W + + +T ++G
Sbjct: 151 VPHQDNSFVYTDPQSCTGLWIALEDSTLVNG 181


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
           transcription factor HUA2, Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1347

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 200 PNICSPCRISSTKSSRAMWNALYIS 274
           PN  S CRIS+ +S  AM N  Y S
Sbjct: 785 PNCNSVCRISTAESENAMQNNSYYS 809


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,347
Number of Sequences: 28952
Number of extensions: 223900
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)