Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l02r
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 262 2e-70
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 262 2e-70
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 262 2e-70
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 261 3e-70
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 260 5e-70
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 48 4e-06
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.012
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.3
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.1
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 3.1
At4g14280.1 68417.m02201 hypothetical protein 28 5.4
At3g55160.1 68416.m06126 expressed protein 28 5.4
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 7.1
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 7.1
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 7.1
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 7.1
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro... 27 9.4
At4g00670.1 68417.m00092 remorin family protein contains Pfam do... 27 9.4
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 262 bits (641), Expect = 2e-70
Identities = 124/165 (75%), Positives = 141/165 (85%)
Frame = -3
Query: 496 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 317
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 316 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 137
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 136 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGII 2
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+I
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVI 173
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 262 bits (641), Expect = 2e-70
Identities = 124/165 (75%), Positives = 141/165 (85%)
Frame = -3
Query: 496 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 317
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 316 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 137
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 136 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGII 2
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+I
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVI 173
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 262 bits (641), Expect = 2e-70
Identities = 124/165 (75%), Positives = 141/165 (85%)
Frame = -3
Query: 496 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 317
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 316 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 137
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 136 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGII 2
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+I
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVI 173
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 261 bits (639), Expect = 3e-70
Identities = 123/163 (75%), Positives = 140/163 (85%)
Frame = -3
Query: 490 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 311
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 310 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 131
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 130 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGII 2
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+I
Sbjct: 121 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 163
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 260 bits (637), Expect = 5e-70
Identities = 123/163 (75%), Positives = 140/163 (85%)
Frame = -3
Query: 490 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 311
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 310 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 131
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 130 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGII 2
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G+I
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVI 163
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/130 (23%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Frame = -3
Query: 496 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 326
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 325 KIAVHCTVRGAKAEEILERGL-----KVREYE-LRRDNFSATGNFGFGIQEH-IDLGIKY 167
+ + T+RG L+R + + R+++ + +F GN+ G+++ + I++
Sbjct: 139 PLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRF 198
Query: 166 DPSIGIYGLD 137
D G+D
Sbjct: 199 DAVGKTRGMD 208
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = -3
Query: 283 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 119
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 207 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 368
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 286 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 122
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 324 FSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 455
FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 243 FSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 189 TLTWVSSTIPQLEFMDWTFTS 127
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 405 WSNSQDNS----LYFPR--LGIQCGLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMN 244
W ++NS L+FP GI +V +++ +V S +++ + + EN++
Sbjct: 833 WDRLRENSFRILLHFPTPFTGISSEDMVQIIIPWAKQLVCSPRVRESDA-----ECENID 887
Query: 243 CGVTTSPPRVILASVFKNTLTWVSSTIPQLE 151
C S P+ + K+ + W+ +++ + E
Sbjct: 888 CRNQNSKPKYPVVEYIKSLIQWLDASVTEGE 918
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 240 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 109
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 497 KCNAESSYQKALLEHMCW 444
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 497 KCNAESSYQKALLEHMCW 444
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 279 ISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 413
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
[Rhodococcus sp.] GI:8926386; contains Interpro entry
IPR000379
Length = 392
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 5 DTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCY 103
DTI L L+++ L + G+ + SC+ ++CY
Sbjct: 343 DTIQLLSSSLNNLILVQLAGEVYQSCVVFTLCY 375
>At4g00670.1 68417.m00092 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 116
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 334 RNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATG 215
RNEK AVH + KA+ R ++ + E F A G
Sbjct: 66 RNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAG 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,314,505
Number of Sequences: 28952
Number of extensions: 281222
Number of successful extensions: 792
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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