Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l02f
(562 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 283 5e-77
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 30 1.1
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 2.6
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 6.0
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2) 27 7.9
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 283 bits (695), Expect = 5e-77
Identities = 132/155 (85%), Positives = 144/155 (92%)
Frame = +3
Query: 96 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 275
N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61
Query: 276 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 455
VHCTVRG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYDPSIGIYG+D
Sbjct: 62 VHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 121
Query: 456 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 560
F+VVLGRPGFN++ R+ K G+VGFPHRLTK+DAMK
Sbjct: 122 FFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMK 156
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 157 VTG*LVPPRCWSNSQDNSLYFP 222
VT LVPP W+ SQD +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 391 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 236
P P++P + L S + S S +KP+SRI ++L+ ++Q ++ + +P+ T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 391 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 236
P P++P + L S S +KPLSRI ++ + ++Q +A + + +P+ T
Sbjct: 299 PLPRIPTSPSLVSLLARPSYLYKPLSRIPTSPSLVSLQASASYPYKTLPRIST 351
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 29.1 bits (62), Expect = 2.6
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = -1
Query: 391 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIF---SLRRIPKDRTVYLA 224
P P++P + L + L T+KPL RIS++L+ ++Q + + L RIP D ++ ++
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPRIPSDLSL-VS 361
Query: 223 LENTGCCPVSCSNTLAARVSLSP 155
L+ P S L R+ SP
Sbjct: 362 LQ----APPSYPYKLLPRIPTSP 380
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 186 TPWRHESACHRIHQHICSSKAF*YEDSALHF*NYPSEPSSPFYLSST 46
T R +S R + CS+K+ + A HF N+ P PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 351 RRDNFSATGNFGFGIQEHIDLGIKYD 428
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 334 TFKPLSRISSALAPRTVQWTAIFSLRRIPKDR 239
T KP S + P+ +WTA L PK+R
Sbjct: 389 TLKPRSILPDGRTPKNPEWTACVKLGMNPKER 420
>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 255 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 383
RR + RGA A EI ++G+K + E RR+ G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 156 GDRLTRAAKVLEQLTGQQPVFSKARY 233
G R TR A +QLT + VFSK Y
Sbjct: 66 GSRRTRTAFTHQQLTALEKVFSKTHY 91
>SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 217 FPRLGIQCGLLVSVVMKRLLSIVQSEELKQKK 312
F L + GL+ +++ KRLLSI S + ++ K
Sbjct: 196 FSALSLVSGLMAAIIAKRLLSIKTSRDSEKHK 227
>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
Length = 147
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = -1
Query: 505 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 326
R C T+KP IP C K K P+++ L YS+ F+
Sbjct: 77 RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136
Query: 325 PLSRISSAL 299
P S+L
Sbjct: 137 PTKTQKSSL 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,909,580
Number of Sequences: 59808
Number of extensions: 375245
Number of successful extensions: 959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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