Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l02f
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 243 7e-65
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 243 7e-65
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 243 7e-65
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 242 1e-64
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 241 2e-64
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 48 3e-06
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.011
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.1
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 2.8
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 2.8
At4g14280.1 68417.m02201 hypothetical protein 28 4.9
At3g55160.1 68416.m06126 expressed protein 28 4.9
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 6.5
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 6.5
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 6.5
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 6.5
At4g00670.1 68417.m00092 remorin family protein contains Pfam do... 27 8.6
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 243 bits (594), Expect = 7e-65
Identities = 117/155 (75%), Positives = 132/155 (85%)
Frame = +3
Query: 96 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 275
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 276 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 455
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 456 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 560
FYVVL RPG+ VA RRR +VG HR+TK+DAMK
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMK 163
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 243 bits (594), Expect = 7e-65
Identities = 117/155 (75%), Positives = 132/155 (85%)
Frame = +3
Query: 96 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 275
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 276 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 455
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 456 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 560
FYVVL RPG+ VA RRR +VG HR+TK+DAMK
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMK 163
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 243 bits (594), Expect = 7e-65
Identities = 117/155 (75%), Positives = 132/155 (85%)
Frame = +3
Query: 96 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 275
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 276 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 455
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 456 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 560
FYVVL RPG+ VA RRR +VG HR+TK+DAMK
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMK 163
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 242 bits (592), Expect = 1e-64
Identities = 116/153 (75%), Positives = 131/153 (85%)
Frame = +3
Query: 102 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 281
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 282 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 461
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 462 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 560
VVL RPG+ VA RRR +VG HR+TK+DAMK
Sbjct: 121 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMK 153
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 241 bits (590), Expect = 2e-64
Identities = 116/153 (75%), Positives = 131/153 (85%)
Frame = +3
Query: 102 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 281
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 282 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 461
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 462 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 560
VVL RPG+ VA RRR +VG HR+TK+DAMK
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMK 153
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/130 (23%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Frame = +3
Query: 96 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 266
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 267 KIAVHCTVRGAKAEEILERGL-----KVREYE-LRRDNFSATGNFGFGIQEH-IDLGIKY 425
+ + T+RG L+R + + R+++ + +F GN+ G+++ + I++
Sbjct: 139 PLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRF 198
Query: 426 DPSIGIYGLD 455
D G+D
Sbjct: 199 DAVGKTRGMD 208
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.011
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 309 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 473
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 385 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 224
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 470
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 268 FSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 137
FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 243 FSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 403 TLTWVSSTIPQLEFMDWTFTS 465
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +1
Query: 187 WSNSQDNS----LYFPR--LGIQCGLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMN 348
W ++NS L+FP GI +V +++ +V S +++ + + EN++
Sbjct: 833 WDRLRENSFRILLHFPTPFTGISSEDMVQIIIPWAKQLVCSPRVRESDA-----ECENID 887
Query: 349 CGVTTSPPRVILASVFKNTLTWVSSTIPQLE 441
C S P+ + K+ + W+ +++ + E
Sbjct: 888 CRNQNSKPKYPVVEYIKSLIQWLDASVTEGE 918
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 352 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 483
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 95 KCNAESSYQKALLEHMCW 148
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 95 KCNAESSYQKALLEHMCW 148
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 313 ISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 179
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
>At4g00670.1 68417.m00092 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 116
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 258 RNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATG 377
RNEK AVH + KA+ R ++ + E F A G
Sbjct: 66 RNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAG 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,472
Number of Sequences: 28952
Number of extensions: 259069
Number of successful extensions: 735
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -