Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l01r
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RTB6 Cluster: Dynein beta chain, ciliary; n=12; Plasm...    33   9.0  

>UniRef50_Q7RTB6 Cluster: Dynein beta chain, ciliary; n=12; Plasmodium
            (Vinckeia)|Rep: Dynein beta chain, ciliary - Plasmodium
            yoelii yoelii
          Length = 5174

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
 Frame = -2

Query: 377  NFLNLKYFAYKDIIVNNYSYLGRSENKNSNVQ*IYSIFNYSIV*KSNINMYSIVCPS-CS 201
            N ++L     KD ++NN   + +SEN          IF+Y I  K N N++ I+C S  S
Sbjct: 3018 NIIDLYTKEEKDYVINNVRNIAKSENIKETDN---DIFDYYIK-KVNENLHFILCFSPTS 3073

Query: 200  SRM*KNFNNV*CDVKRIQ-TTHTQWPAYLLQSKPKNNKKSVFHQI 69
            +      NN  C +       +  W A  L    KN   +++  I
Sbjct: 3074 NNFRDKANNFQCILNNTMIDIYDNWEADSLMCVGKNYVNNIYMNI 3118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,146,180
Number of Sequences: 1657284
Number of extensions: 10346677
Number of successful extensions: 21107
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 20121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21101
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)