Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l01r
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.34 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   4.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 141 SCLDTFYITLYIIKILLHTRRAARTYNAI 227
           SC D  Y T Y   + +H RR   T N +
Sbjct: 288 SCRDCSYATKYCHSLKIHLRRYGHTPNVV 316


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 141 SCLDTFYITLYIIKILLHTRR 203
           SC D  Y T Y   + +H RR
Sbjct: 46  SCRDCSYATKYCHSLKIHLRR 66


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 86  FFYCF*AYFVINRLATVCELFGYVLH 163
           F+Y F   F ++ L  VC  + Y +H
Sbjct: 241 FYYAF-ILFTVHLLLLVCIYYFYYMH 265


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/31 (16%), Positives = 19/31 (61%)
 Frame = +2

Query: 431  RYLSRLIHKYLSFFRVVTKKKYSLNFIKESL 523
            ++ + +IH++ +F +++TK +   +   + +
Sbjct: 1298 QFFAMMIHRFGTFSQIITKTQLDFDLCSKPI 1328


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/31 (16%), Positives = 19/31 (61%)
 Frame = +2

Query: 431  RYLSRLIHKYLSFFRVVTKKKYSLNFIKESL 523
            ++ + +IH++ +F +++TK +   +   + +
Sbjct: 1298 QFFAMMIHRFGTFSQIITKTQLDFDLCSKPI 1328


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,951
Number of Sequences: 336
Number of extensions: 3302
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)