Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l01r
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical p...    33   0.20 
Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical
           protein C51E3.4 protein.
          Length = 315

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = +3

Query: 15  ITFYVYNNYSFVHFFLVCNLMKNAFFIVFRLTL**IGWPLCVSCLDTFYITL-YIIKILL 191
           I F V   Y  V+F L  N     F  VFR  L  +G+ L      T   TL Y I  + 
Sbjct: 179 IYFLVVIVYGIVYFLLKSNQASARFKSVFRSILVTVGFVLFGWVTTTLTNTLSYEITSVA 238

Query: 192 HTRRAARTYNAIHIDVGLLDNAIIKY*VNLLY 287
            T +  + Y  I ++     NA I Y +N  Y
Sbjct: 239 FTAQLMQMYAGITVNFAAASNAFIFYAINSEY 270


>Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical
           protein R11.3 protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TSHYTLLKFFYIREEQLGHTMLYILML 240
           TS Y LLK  Y R   LG+T+L I M+
Sbjct: 119 TSQYELLKLVYSRSVNLGNTVLDIHMM 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,301
Number of Sequences: 27780
Number of extensions: 269694
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)