Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l01f
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0011 + 4148469-4149371,4153358-4153960                           29   3.1  
01_01_0514 - 3739843-3739933,3740120-3740212,3740346-3740453,374...    27   9.4  

>10_02_0011 + 4148469-4149371,4153358-4153960
          Length = 501

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 618 IGWPLCVSWLDTFYITLYIIKILLHTRR 535
           +GW L   WL  F I+LY++ IL H+ R
Sbjct: 6   LGWLL---WLPVFLISLYLVDILAHSCR 30


>01_01_0514 -
           3739843-3739933,3740120-3740212,3740346-3740453,
           3740559-3740616,3740778-3741012
          Length = 194

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 367 LNLKYFAYKDIIVNNYSYLGRSENKNSNV 453
           L L+ FAY ++  N Y+  GRSE+++  +
Sbjct: 165 LFLRDFAYDNVADNRYAVFGRSESESCEI 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,926
Number of Sequences: 37544
Number of extensions: 208852
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)