Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l01f
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.81 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.81 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.81 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.81 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 406 NNYSYLGRSENKNSNVQ*IYSIFNY 480
           NNY Y   + N N+N + +Y   NY
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 406 NNYSYLGRSENKNSNVQ*IYSIFNY 480
           NNY Y   + N N+N + +Y   NY
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 3   N*NETLKRDYSEINYEFTASIVIPMY 80
           N N   K+ Y  INY     I +P+Y
Sbjct: 104 NYNNNCKKLYYNINYIEQIPIPVPVY 129


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 406 NNYSYLGRSENKNSNVQ*IYSIFNY 480
           NNY Y   + N N+N + +Y   NY
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 3   N*NETLKRDYSEINYEFTASIVIPMY 80
           N N   K+ Y  INY     I +P+Y
Sbjct: 104 NYNNNCKKLYYNINYIEQIPIPVPVY 129


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 406 NNYSYLGRSENKNSNVQ*IYSIFNY 480
           NNY Y   + N N+N + +Y   NY
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINY 118



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 3   N*NETLKRDYSEINYEFTASIVIPMY 80
           N N   K+ Y  INY     I +P+Y
Sbjct: 104 NYNNNCKKLYYNINYIEQIPIPVPVY 129


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 370 NLKYFAYKDIIVNNYSYLGRSENKNSNVQ*IYSIFNY 480
           N KY  Y +   N  +Y   + N N+N + +Y   NY
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 376 KYFAYKDIIVNNYSYLGRSENKNSNVQ*IYSIFNY 480
           K  +  + + NNY+Y     N N+N    Y    Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQY 114


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 3   N*NETLKRDYSEINYEFTASIVIPMY 80
           N N   K+ Y  INY     I +P+Y
Sbjct: 99  NYNNNCKKLYYNINYIEQIPIPVPVY 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,860
Number of Sequences: 438
Number of extensions: 3030
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)