Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k22f
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 30 0.25
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.3
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 1.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 5.4
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 7.2
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.2
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.2
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 7.2
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 23 8.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.5
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 649 VNEVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 518
+ + V +++A++ G + ++L C+VN H H+ R+Y
Sbjct: 920 IEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 224 RYHSLCQFYNIHHQ--CLVGSHLG 159
+Y++ C FYNI H C G LG
Sbjct: 35 KYYNFCPFYNIQHNYTCQTGDPLG 58
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 301
+ K+ D + L DD KD+ ++ +N +Y NK ++ F + + F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 149 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 241
L+FF Q+V Q+N +DEY + + D E +DN
Sbjct: 49 LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 143 KILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 265
K L + S YYK+ K Y + N D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 128 VEKQKKILSFFQDVSQLNTDDEY---YKIGKDYDIEMNMDNYTNKKAVEEFLKMY 283
+EK K I+ F+ D+ T +EY +K +D+ ++ +++ L++Y
Sbjct: 496 IEKIKNIVPFYVDIDDTKTTEEYIINFKKNSWLFFRKKIDSEMSEVLLQQRLRVY 550
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 431 NQGQFL-YAFYIAVIQRSDCHG 493
N G FL YAF+ VI+ D HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 98 HKDKNVDAVFVEKQKKIL 151
HKDKNV +F+ ++ ++L
Sbjct: 163 HKDKNVSDIFIMRRNRLL 180
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 22.6 bits (46), Expect(2) = 8.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 104 LYGARLWYCTAERDGYKPS 48
L+ R+WY D Y+PS
Sbjct: 208 LFTPRVWYPLFPEDNYQPS 226
Score = 20.6 bits (41), Expect(2) = 8.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = -1
Query: 146 FSFAFQQIRHPHFCLYGARLWY 81
+S+ F + HP Y LW+
Sbjct: 174 YSYPFFFVDHPPLSSYSPFLWF 195
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 506 APYEVYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKEN 634
A + Y K+ ME +Q +Q GL+N + + +H+ N
Sbjct: 615 AQIQAYNKLQSQMEHVQNSNEQHLQPGLLNKVSKSFDSVHRRN 657
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,942
Number of Sequences: 5004
Number of extensions: 51895
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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