Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k22f
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 33 0.18
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 33 0.18
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 30 1.6
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 1.6
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 1.6
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 30 1.6
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 30 1.6
Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p4... 28 6.6
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 33.1 bits (72), Expect = 0.18
Identities = 29/100 (29%), Positives = 47/100 (47%)
Frame = +2
Query: 86 KAEHHKDKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 265
+ E K VD K KK+ S F + +T D YY + + + + + +TN V+
Sbjct: 38 ETEEEAQKYVDD---RKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVK 86
Query: 266 EFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKD 385
E +K Y P + ++S +EAIA FH +Y K+
Sbjct: 87 EHIKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 33.1 bits (72), Expect = 0.18
Identities = 29/100 (29%), Positives = 47/100 (47%)
Frame = +2
Query: 86 KAEHHKDKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 265
+ E K VD K KK+ S F + +T D YY + + + + + +TN V+
Sbjct: 38 ETEEEAQKYVDD---RKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVK 86
Query: 266 EFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKD 385
E +K Y P + ++S +EAIA FH +Y K+
Sbjct: 87 EHIKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 592 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 443
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 302 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 436
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 302 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 436
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 592 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 443
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 592 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 443
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical
protein M153.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 622 NAILSCGFRINEAILHLCYVNFLQHFHIHK 533
+AI+ CG ++ + LCY+NF Q + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324
>AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p450
family protein 34A6 protein.
Length = 498
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 152 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 271
+F +S ++TDDE +K K+++ E M+N +K + F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,924
Number of Sequences: 27780
Number of extensions: 293580
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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