Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k22f
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 33 0.16
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 33 0.16
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 31 0.66
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro... 30 1.5
At1g09910.1 68414.m01115 expressed protein 30 1.5
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 29 2.0
At5g27230.1 68418.m03248 expressed protein ; expression support... 29 2.7
At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co... 29 3.5
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 28 4.7
At3g10200.1 68416.m01221 dehydration-responsive protein-related ... 28 4.7
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 27 8.2
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 535 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 377
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 535 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 377
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 254 KAVEEFLKMYRTGFMPKNLEFSVFYD 331
KA+E F +MY+TG MP + +S D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264
>At2g36305.1 68415.m04456 CAAX amino terminal protease family
protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
(Prenyl protein-specific endoprotease 2)
(Farnesylated-proteins converting enzyme 2) (FACE-2)
from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 242
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -2
Query: 649 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 509
V E +VF ++ +L GFRIN AI LC V F L H + HFR +IR
Sbjct: 93 VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 23 NHEVCLNSGWACSRRAQQCSTKAEHHKDKNVDA 121
NHE LN+G CS Q ++ H KD + +
Sbjct: 14 NHETALNAGHHCSEGTDQGTSGLSHRKDHRMSS 46
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 80 STKAEHHKDKNVDA--VFVEKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYT 247
S + + KDK V + EK +K+L+ Q + QL D+ K+G Y E +DN
Sbjct: 63 SVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNIL 122
Query: 248 NKKAVEEFLKMYRTGFMPKNLEFSVF 325
++ + + LEF +F
Sbjct: 123 TSSYKKDRTNIQESDLHATALEFRLF 148
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 113 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 277
V A+ +EK++K L D S E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit; tomato leucine zipper-containing protein,
Lycopersicon esculentum, PIR:S21495
Length = 636
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 23 NHEVCLNSGWACSRRAQQCSTKAEHHKDKNVDAVFVEKQKKIL 151
NH + ++ W + TKAEH+KD ++ +F+ +I+
Sbjct: 430 NHALSVHFAWLILVLLCKLDTKAEHYKDVSLSYLFLANNLQII 472
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 179 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 274
N +DEY K DYD + +D T K+A + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573
>At3g10200.1 68416.m01221 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 591
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -1
Query: 239 CPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHFCL 102
CP F + C HQ L +L RR + + H FCL
Sbjct: 75 CPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCL 120
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 561 IFCSTSIFINILGYTSYGAGTTKPW 487
++CS + LGYT GA T PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,004
Number of Sequences: 28952
Number of extensions: 261144
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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