BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k22f (650 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 33 0.16 At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 33 0.16 At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 31 0.66 At2g36305.1 68415.m04456 CAAX amino terminal protease family pro... 30 1.5 At1g09910.1 68414.m01115 expressed protein 30 1.5 At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 29 2.0 At5g27230.1 68418.m03248 expressed protein ; expression support... 29 2.7 At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co... 29 3.5 At5g40200.1 68418.m04878 DegP protease, putative contains simila... 28 4.7 At3g10200.1 68416.m01221 dehydration-responsive protein-related ... 28 4.7 At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 27 8.2 >At2g46020.2 68415.m05725 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2193 Score = 33.1 bits (72), Expect = 0.16 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 535 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 377 K R + R + + AL N+DVE +E+ L+E T G ER+ VLS Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879 >At2g46020.1 68415.m05724 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2192 Score = 33.1 bits (72), Expect = 0.16 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 535 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 377 K R + R + + AL N+DVE +E+ L+E T G ER+ VLS Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879 >At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing protein contains similarity to 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] GI:9755886; contains Pfam profile PF01535: PPR repeat Length = 711 Score = 31.1 bits (67), Expect = 0.66 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 254 KAVEEFLKMYRTGFMPKNLEFSVFYD 331 KA+E F +MY+TG MP + +S D Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264 >At2g36305.1 68415.m04456 CAAX amino terminal protease family protein similar to CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl protein-specific endoprotease 2) (Farnesylated-proteins converting enzyme 2) (FACE-2) from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256], Drosophila melanogaster [SP|Q9U1H8]; contains Pfam profile PF02517 CAAX amino terminal protease family protein Length = 242 Score = 29.9 bits (64), Expect = 1.5 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = -2 Query: 649 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 509 V E +VF ++ +L GFRIN AI LC V F L H + HFR +IR Sbjct: 93 VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139 >At1g09910.1 68414.m01115 expressed protein Length = 675 Score = 29.9 bits (64), Expect = 1.5 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 23 NHEVCLNSGWACSRRAQQCSTKAEHHKDKNVDA 121 NHE LN+G CS Q ++ H KD + + Sbjct: 14 NHETALNAGHHCSEGTDQGTSGLSHRKDHRMSS 46 >At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly identical to GI:9957293; contains Pfam profile: PF01397 terpene synthase family Length = 591 Score = 29.5 bits (63), Expect = 2.0 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Frame = +2 Query: 80 STKAEHHKDKNVDA--VFVEKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYT 247 S + + KDK V + EK +K+L+ Q + QL D+ K+G Y E +DN Sbjct: 63 SVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNIL 122 Query: 248 NKKAVEEFLKMYRTGFMPKNLEFSVF 325 ++ + + LEF +F Sbjct: 123 TSSYKKDRTNIQESDLHATALEFRLF 148 >At5g27230.1 68418.m03248 expressed protein ; expression supported by MPSS Length = 948 Score = 29.1 bits (62), Expect = 2.7 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +2 Query: 113 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 277 V A+ +EK++K L D S E+ K KD+D+E + K+ VE+ K Sbjct: 69 VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122 >At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; tomato leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 Length = 636 Score = 28.7 bits (61), Expect = 3.5 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +2 Query: 23 NHEVCLNSGWACSRRAQQCSTKAEHHKDKNVDAVFVEKQKKIL 151 NH + ++ W + TKAEH+KD ++ +F+ +I+ Sbjct: 430 NHALSVHFAWLILVLLCKLDTKAEHYKDVSLSYLFLANNLQII 472 >At5g40200.1 68418.m04878 DegP protease, putative contains similarity to DegP2 protease GI:13172275 from [Arabidopsis thaliana] Length = 592 Score = 28.3 bits (60), Expect = 4.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 179 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 274 N +DEY K DYD + +D T K+A + L Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573 >At3g10200.1 68416.m01221 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase Length = 591 Score = 28.3 bits (60), Expect = 4.7 Identities = 14/46 (30%), Positives = 18/46 (39%) Frame = -1 Query: 239 CPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHFCL 102 CP F + C HQ L +L RR + + H FCL Sbjct: 75 CPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCL 120 >At3g45530.1 68416.m04917 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 692 Score = 27.5 bits (58), Expect = 8.2 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -3 Query: 561 IFCSTSIFINILGYTSYGAGTTKPW 487 ++CS + LGYT GA T PW Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,240,004 Number of Sequences: 28952 Number of extensions: 261144 Number of successful extensions: 681 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 681 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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