SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k22f
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.16 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.16 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   0.66 
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    30   1.5  
At1g09910.1 68414.m01115 expressed protein                             30   1.5  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   2.0  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   2.7  
At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co...    29   3.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   4.7  
At3g10200.1 68416.m01221 dehydration-responsive protein-related ...    28   4.7  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    27   8.2  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 535 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 377
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 535 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 377
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 254 KAVEEFLKMYRTGFMPKNLEFSVFYD 331
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -2

Query: 649 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 509
           V E +VF   ++  +L  GFRIN AI  LC V F L H +   HFR  +IR
Sbjct: 93  VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 23  NHEVCLNSGWACSRRAQQCSTKAEHHKDKNVDA 121
           NHE  LN+G  CS    Q ++   H KD  + +
Sbjct: 14  NHETALNAGHHCSEGTDQGTSGLSHRKDHRMSS 46


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 80  STKAEHHKDKNVDA--VFVEKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYT 247
           S + +  KDK V    +  EK +K+L+  Q   + QL   D+  K+G  Y  E  +DN  
Sbjct: 63  SVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNIL 122

Query: 248 NKKAVEEFLKMYRTGFMPKNLEFSVF 325
                ++   +  +      LEF +F
Sbjct: 123 TSSYKKDRTNIQESDLHATALEFRLF 148


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 113 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 277
           V A+ +EK++K L    D S      E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit; tomato leucine zipper-containing protein,
           Lycopersicon esculentum, PIR:S21495
          Length = 636

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 23  NHEVCLNSGWACSRRAQQCSTKAEHHKDKNVDAVFVEKQKKIL 151
           NH + ++  W       +  TKAEH+KD ++  +F+    +I+
Sbjct: 430 NHALSVHFAWLILVLLCKLDTKAEHYKDVSLSYLFLANNLQII 472


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 179 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 274
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


>At3g10200.1 68416.m01221 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 591

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -1

Query: 239 CPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHFCL 102
           CP  F  +  C      HQ L   +L RR +       + H  FCL
Sbjct: 75  CPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCL 120


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 561 IFCSTSIFINILGYTSYGAGTTKPW 487
           ++CS     + LGYT  GA T  PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,004
Number of Sequences: 28952
Number of extensions: 261144
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -