Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k21f
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    45   4e-07
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.9  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   4.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   5.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 45.2 bits (102), Expect = 4e-07
 Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
 Frame = +1

Query: 274 SVYILDLNGNNITTL-KPF--PNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNN 444
           ++ +LDL+ NNIT++ K F  P ++ + +L +  N+L    ++ F  + +L  +DLS N+
Sbjct: 224 NIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNS 283

Query: 445 ISYVDPEAFLDSRGLLNVELQDNPIGNVEGP-FLVSPTLQYLDLSNCNITS 594
           +  +D + F +++ L  ++   N I  +    F     L+ +D S+  + S
Sbjct: 284 LYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRS 334



 Score = 41.5 bits (93), Expect = 5e-06
 Identities = 21/69 (30%), Positives = 41/69 (59%)
 Frame = +1

Query: 325 FPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLLNVEL 504
           F + I++ ++ + DNR+  +ER AF  L+ L  ++L GN I+ +  E F +   L +++L
Sbjct: 112 FADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDL 171

Query: 505 QDNPIGNVE 531
             N I +++
Sbjct: 172 AYNSISSLD 180



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 391 EAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPI 519
           +A K L  L ++DLS N +  V   +F   R L  V LQDN I
Sbjct: 36  DAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTI 78



 Score = 31.1 bits (67), Expect = 0.007
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
 Frame = +1

Query: 223 DCSESNLTEVPYDELSLS----VYILDLNGNNITTLKPFPNDIKMRRLQIAD---NRLTR 381
           D S + L ++P   LSL+    +  LDL+ N+I++L       + + L   D   NRL +
Sbjct: 349 DVSHNLLGKLPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQ 408

Query: 382 VEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRG----LLNVELQDNPIGNVEGPFLVS 549
           ++   FKG+  L  ++L  N+   ++    L  +G    LL++ L +  +  V  P L +
Sbjct: 409 IDAGTFKGIPRLASLNLGHNSQLTLEING-LSFQGLEYTLLHLNLDNVSLSQV--PALST 465

Query: 550 PTLQYLDLS 576
           P L  L L+
Sbjct: 466 PNLLSLSLA 474



 Score = 26.6 bits (56), Expect = 0.16
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 403 GLEYLIDIDLSGNNISYVDPEAFLD-SRGLLNVELQDNPIGN-VEGPFLVSPTLQYLDLS 576
           GL+ +  +DLS NNI+ V  + F      L+ + L  N + N  +  F   P LQ LDLS
Sbjct: 221 GLQNIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLS 280

Query: 577 N 579
           +
Sbjct: 281 H 281


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 422 SIKYSRPLNASRSTLVSRLSAICNL 348
           S+ ++ P+N S   L+S L A+C +
Sbjct: 159 SVSFAFPINLSVPVLLSGLIAMCGM 183


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 422 SIKYSRPLNASRSTLVSRLSAICNL 348
           S+ ++ P+N S   L+S L A+C +
Sbjct: 392 SVSFAFPINLSVPVLLSGLIAMCGM 416


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 422 SIKYSRPLNASRSTLVSRLSAICNL 348
           S+ ++ P+N S   L+S L A+C +
Sbjct: 392 SVSFAFPINLSVPVLLSGLIAMCGM 416


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 409 EYLIDIDLSGNNISYV 456
           E  +D+DL GN  SYV
Sbjct: 154 ENALDVDLIGNVCSYV 169


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 226 CSESNLTEVPYDELSLSVYILDLNGNNITT 315
           C ESN+     +      Y L+++ NN  T
Sbjct: 79  CIESNMISFYLEATDDFAYFLEVSNNNFKT 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,378
Number of Sequences: 336
Number of extensions: 2576
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)