BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k21f (594 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 37 0.003 SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 35 0.010 SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 34 0.014 SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 31 0.096 SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 31 0.13 SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 30 0.29 SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 28 1.2 SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 1.6 SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 2.1 SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 26 3.6 SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.6 SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 4.8 SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.3 SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 8.3 >SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22 |Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 36.7 bits (81), Expect = 0.003 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +1 Query: 286 LDLNGNNITTLKPFPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVD 459 LDL+ NNI T++ + + L NR+ R+E +GL+ L +++L GN I ++ Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIEN--LEGLDRLTNLELGGNKIRVIE 164 >SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 239 Score = 34.7 bits (76), Expect = 0.010 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +1 Query: 286 LDLNGNNITTLKPFPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYV-DP 462 +D N+I L FP +++ L +NR+T + + K L L + L+ N++ + D Sbjct: 46 IDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADL 105 Query: 463 EAFLDSRGLLNVELQDNPI 519 + L N+ DNP+ Sbjct: 106 DPLASCPQLTNLSCIDNPV 124 >SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccharomyces pombe|chr 1|||Manual Length = 621 Score = 34.3 bits (75), Expect = 0.014 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +1 Query: 352 LQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPIGNVE 531 L+ + +L + + F L+ L+ +DLSGN ++ + P A + L ++ L N I Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNKITGCR 395 Query: 532 GPFLVSPT-LQYLDLSNCNITS 594 + +S + LQ L LS ++TS Sbjct: 396 TFYHISLSHLQILVLSRNHLTS 417 >SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |Schizosaccharomyces pombe|chr 3|||Manual Length = 690 Score = 31.5 bits (68), Expect = 0.096 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Frame = +1 Query: 202 FRINWVTDC--SESNLTEVPYDELSL-SVYILDLNGNNITTLKPFPNDI-KMRRLQIADN 369 F+ +++T+ + +NLT +P + L ++ ILD +GN+I T+ P + ++R + + DN Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDN 237 Query: 370 RLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDS--RGLLNVELQDNPIG 522 ++ + E L L + + GN + V ++S GL+ P+G Sbjct: 238 MISVIPAE-LGTLFQLKILGIEGNPLQDVYKNQIMESGTAGLIAALRDGCPVG 289 >SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit Apc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 737 Score = 31.1 bits (67), Expect = 0.13 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Frame = -1 Query: 399 ERFTFDSG-QSIISYLQ--SPHLDIVREGLEGCNV-VAVQI*NIHAEAELIIWHFGEV 238 E+F+F+ G Q S+LQ +P +D EG+E C + V ++ N+ + L+ FG + Sbjct: 149 EQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINVRHELMNLASNKTLLQLAFGSI 206 >SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 732 Score = 29.9 bits (64), Expect = 0.29 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = -1 Query: 477 IQERLGVHITDVVSRQININQVFQ-ALERFTFDSGQSIISYLQSPHLDIVREGLEGCNVV 301 IQE G H+ D V Q N N V Q A+E Q I+ L+ P + ++ GC V+ Sbjct: 503 IQELDG-HVLDCVCDQ-NGNHVIQKAIECIDTGHLQFILRALR-PQIHVLSAHPYGCRVI 559 Query: 300 AVQI*NIHAEAELII 256 I + H+E +LII Sbjct: 560 QRAIEHCHSERKLII 574 >SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1692 Score = 27.9 bits (59), Expect = 1.2 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Frame = +1 Query: 262 ELSLSVYILDLNGNNITTLKPFPNDIK-MRRLQIADNRLTRVEREAFKGLEYLIDIDLSG 438 E ++V + +N N+ T++ + ++ ++ L + ++ V K L++L+ +DL Sbjct: 680 ETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGK-LKHLVHLDLHA 738 Query: 439 NNISYVDPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTL 558 NNI + PE L V L N + ++ P S L Sbjct: 739 NNIK-IFPEEVWQVSSLKVVNLSSNILEKIKLPVATSKKL 777 >SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1082 Score = 27.5 bits (58), Expect = 1.6 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = +1 Query: 52 FLK*QPHAINEHTMALKTSLVFCLIA-TGLSYAFNGDSFELECPDECDCH--YFRINWVT 222 +L + +NEH LK+S F + T LS + + + P H YF NW + Sbjct: 40 YLSKRSEKLNEHNSKLKSSGSFTSNSQTDLSNSPSSKKKNIFYPIARAKHSFYFNHNWSS 99 Query: 223 DCSESNLTEVPYDELSLS 276 D ++N Y S+S Sbjct: 100 DLQQANSPVASYSSQSVS 117 >SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 1115 Score = 27.1 bits (57), Expect = 2.1 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +1 Query: 196 HYFRINWVTDCSESNLTEVPYDELSLSVYIL 288 H R+N C ++ + D+ SLSVY+L Sbjct: 741 HLRRVNDTMQCVSQKISNLDKDQQSLSVYVL 771 >SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 311 Score = 26.2 bits (55), Expect = 3.6 Identities = 7/21 (33%), Positives = 16/21 (76%) Frame = +1 Query: 85 HTMALKTSLVFCLIATGLSYA 147 HTM +K + ++C+I+ +S++ Sbjct: 272 HTMPIKRAYIYCIISVAISFS 292 >SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 311 Score = 26.2 bits (55), Expect = 3.6 Identities = 7/21 (33%), Positives = 16/21 (76%) Frame = +1 Query: 85 HTMALKTSLVFCLIATGLSYA 147 HTM +K + ++C+I+ +S++ Sbjct: 272 HTMPIKRAYIYCIISVAISFS 292 >SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1242 Score = 25.8 bits (54), Expect = 4.8 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 425 ISIKYSRPLNASRSTLVSRLSAICNLLILISFGKGLR 315 +SIK +PL +RS + +S C L L S+ G R Sbjct: 825 LSIKLFKPLELTRSFWRTLVSTFCRCLRLSSYVMGQR 861 >SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 659 Score = 25.0 bits (52), Expect = 8.3 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 480 PRFAKRGASRQSNRQRRRPLPRLSNVAVS 566 P F K A R +N + R L RLS++ S Sbjct: 18 PEFVKDPALRNANARPREKLQRLSHIQFS 46 >SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces pombe|chr 3|||Manual Length = 1364 Score = 25.0 bits (52), Expect = 8.3 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 409 EYLIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTL 558 E ++D+D++ NNI+ F S GL L++ P+ N+ P +P L Sbjct: 358 EAIVDMDITSNNINLSPVSHF--SNGLDLQNLEEAPM-NLTRPINANPHL 404 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,303,080 Number of Sequences: 5004 Number of extensions: 44980 Number of successful extensions: 133 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 258201856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -