Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k21f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    37   0.003
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    35   0.010
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    34   0.014
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    31   0.096
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    31   0.13 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    30   0.29 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.2  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   1.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   3.6  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   4.8  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   8.3  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 286 LDLNGNNITTLKPFPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVD 459
           LDL+ NNI T++   +   +  L    NR+ R+E    +GL+ L +++L GN I  ++
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIEN--LEGLDRLTNLELGGNKIRVIE 164


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 286 LDLNGNNITTLKPFPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYV-DP 462
           +D   N+I  L  FP   +++ L   +NR+T +  +  K L  L  + L+ N++  + D 
Sbjct: 46  IDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADL 105

Query: 463 EAFLDSRGLLNVELQDNPI 519
           +       L N+   DNP+
Sbjct: 106 DPLASCPQLTNLSCIDNPV 124


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +1

Query: 352 LQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPIGNVE 531
           L+ +  +L  + +  F  L+ L+ +DLSGN ++ + P A  +   L ++ L  N I    
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNKITGCR 395

Query: 532 GPFLVSPT-LQYLDLSNCNITS 594
             + +S + LQ L LS  ++TS
Sbjct: 396 TFYHISLSHLQILVLSRNHLTS 417


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = +1

Query: 202 FRINWVTDC--SESNLTEVPYDELSL-SVYILDLNGNNITTLKPFPNDI-KMRRLQIADN 369
           F+ +++T+   + +NLT +P +   L ++ ILD +GN+I T+ P    + ++R + + DN
Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDN 237

Query: 370 RLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDS--RGLLNVELQDNPIG 522
            ++ +  E    L  L  + + GN +  V     ++S   GL+       P+G
Sbjct: 238 MISVIPAE-LGTLFQLKILGIEGNPLQDVYKNQIMESGTAGLIAALRDGCPVG 289


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -1

Query: 399 ERFTFDSG-QSIISYLQ--SPHLDIVREGLEGCNV-VAVQI*NIHAEAELIIWHFGEV 238
           E+F+F+ G Q   S+LQ  +P +D   EG+E C + V  ++ N+ +   L+   FG +
Sbjct: 149 EQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINVRHELMNLASNKTLLQLAFGSI 206


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -1

Query: 477 IQERLGVHITDVVSRQININQVFQ-ALERFTFDSGQSIISYLQSPHLDIVREGLEGCNVV 301
           IQE  G H+ D V  Q N N V Q A+E       Q I+  L+ P + ++     GC V+
Sbjct: 503 IQELDG-HVLDCVCDQ-NGNHVIQKAIECIDTGHLQFILRALR-PQIHVLSAHPYGCRVI 559

Query: 300 AVQI*NIHAEAELII 256
              I + H+E +LII
Sbjct: 560 QRAIEHCHSERKLII 574


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 262 ELSLSVYILDLNGNNITTLKPFPNDIK-MRRLQIADNRLTRVEREAFKGLEYLIDIDLSG 438
           E  ++V  + +N N+ T++    + ++ ++ L   +  ++ V     K L++L+ +DL  
Sbjct: 680 ETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGK-LKHLVHLDLHA 738

Query: 439 NNISYVDPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTL 558
           NNI  + PE       L  V L  N +  ++ P   S  L
Sbjct: 739 NNIK-IFPEEVWQVSSLKVVNLSSNILEKIKLPVATSKKL 777


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 52  FLK*QPHAINEHTMALKTSLVFCLIA-TGLSYAFNGDSFELECPDECDCH--YFRINWVT 222
           +L  +   +NEH   LK+S  F   + T LS + +     +  P     H  YF  NW +
Sbjct: 40  YLSKRSEKLNEHNSKLKSSGSFTSNSQTDLSNSPSSKKKNIFYPIARAKHSFYFNHNWSS 99

Query: 223 DCSESNLTEVPYDELSLS 276
           D  ++N     Y   S+S
Sbjct: 100 DLQQANSPVASYSSQSVS 117


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 HYFRINWVTDCSESNLTEVPYDELSLSVYIL 288
           H  R+N    C    ++ +  D+ SLSVY+L
Sbjct: 741 HLRRVNDTMQCVSQKISNLDKDQQSLSVYVL 771


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 85  HTMALKTSLVFCLIATGLSYA 147
           HTM +K + ++C+I+  +S++
Sbjct: 272 HTMPIKRAYIYCIISVAISFS 292


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 85  HTMALKTSLVFCLIATGLSYA 147
           HTM +K + ++C+I+  +S++
Sbjct: 272 HTMPIKRAYIYCIISVAISFS 292


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 425 ISIKYSRPLNASRSTLVSRLSAICNLLILISFGKGLR 315
           +SIK  +PL  +RS   + +S  C  L L S+  G R
Sbjct: 825 LSIKLFKPLELTRSFWRTLVSTFCRCLRLSSYVMGQR 861


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 480 PRFAKRGASRQSNRQRRRPLPRLSNVAVS 566
           P F K  A R +N + R  L RLS++  S
Sbjct: 18  PEFVKDPALRNANARPREKLQRLSHIQFS 46


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 409 EYLIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTL 558
           E ++D+D++ NNI+      F  S GL    L++ P+ N+  P   +P L
Sbjct: 358 EAIVDMDITSNNINLSPVSHF--SNGLDLQNLEEAPM-NLTRPINANPHL 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,080
Number of Sequences: 5004
Number of extensions: 44980
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)