Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k21f
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    52   6e-09
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 51.6 bits (118), Expect = 6e-09
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 283 ILDLNGNNITTLKP--FPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYV 456
           ILDL  N+I  ++   F     +  L+++DN+L  V  + F GL  L  + LSGN I+ +
Sbjct: 363 ILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASI 422

Query: 457 DPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTLQYLDLSNCNITS 594
           DP AF +   L  ++L  N + +V         L+ LDL    I++
Sbjct: 423 DPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISN 468



 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
 Frame = +1

Query: 148  FNGDSFELECPDECDCHYFRINWVT---DCSESNLTEVPYDELSLSVYILDLNGNNITTL 318
            F+    E+ CP  C C+  R  W T   DCS   + E+P   + +    + L+GN +  L
Sbjct: 752  FDACDCEMTCPAGCKCYNDR-TWNTNAVDCSGLGVEEIPR-RIPMDATEVYLDGNVLREL 809

Query: 319  KP--FPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLL 492
            +   F     MR L +  + +  ++   F GL  L  + L  N I  +    F     L 
Sbjct: 810  QNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLR 869

Query: 493  NVELQDNPIGNVEG-PFLVSPTLQYLDLS 576
             + LQ+N IG +    FL   +L+ L LS
Sbjct: 870  ELYLQNNLIGFIGNLTFLPLRSLEILRLS 898



 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +1

Query: 283 ILDLNGNNITTLK----PFPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNIS 450
           +L+L GN + + +     F   I++  L ++ N LT ++   FK L +L  +DL  N+I 
Sbjct: 313 VLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSID 372

Query: 451 YVDPEAFLDSRGLLNVELQDNPIGNV 528
            ++  AFL    L  +EL DN +  V
Sbjct: 373 RIESNAFLPLYNLHTLELSDNKLRTV 398



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +1

Query: 286 LDLNGNNITTLKPFPNDIKM-RRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDP 462
           LDL+GN +T++     D+ + + L + +NR++     +F+ L+ L  + L GN+I  +  
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495

Query: 463 EAFLDSRGLLNVELQDNPIGNVE 531
               D   L  + L  N + +VE
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVE 518



 Score = 30.7 bits (66), Expect = 0.011
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
 Frame = +1

Query: 286 LDLNGNNITTL-KPFPNDI-KMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGNNISYVD 459
           L L GN+I  L +    D+  ++ L +A N++  VER AF+    L  I L GN +S ++
Sbjct: 483 LRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDIN 542

Query: 460 PEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTLQYLDL 573
              F     LL + L +N I   +  F +   L++LD+
Sbjct: 543 -GVFTSIASLLLLNLSENHIEWFDYAF-IPGNLKWLDI 578



 Score = 26.6 bits (56), Expect = 0.18
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 223 DCSESNLTEVPYDELSLSVYILDLNGNNITTLKP--FPNDIKMRRLQIADNRLTRVE 387
           D S + +TE+    +  SV +L +N N I  ++P  F + + + R+ +  N +  +E
Sbjct: 601 DASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETME 657


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 262 ELSLSVYILDLNGNNITTLKPFPNDIKMRRLQIADNRLTRVEREAFKGLEYLIDIDLSGN 441
           ++ LS     +  NN  T +    DIK+ +L       +R+E EA +  E +   +L G 
Sbjct: 703 QVELSNMYRTMEANNYDTAEEAIRDIKIGKLMAFIWDSSRLEFEAAQDCELVTAGELFGR 762

Query: 442 N 444
           +
Sbjct: 763 S 763


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 380 LVSRLSAICNLLILISFGKGLRVVMLLPFKSRIYTLRLSSSYGT 249
           LV +L   CN L++      L V +L+   + +Y +  + S+GT
Sbjct: 68  LVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEISGNWSFGT 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,468
Number of Sequences: 438
Number of extensions: 3030
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)