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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k20r
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    177   4e-45
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   169   7e-43
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   151   3e-37
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   133   5e-32
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    28   2.9  
08_02_1238 + 25486263-25487574,25488210-25489117                       27   6.8  
03_05_0796 + 27787401-27788831                                         27   6.8  
11_06_0513 + 24466131-24469487                                         27   9.0  
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    27   9.0  

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  177 bits (430), Expect = 4e-45
 Identities = 87/127 (68%), Positives = 100/127 (78%)
 Frame = -1

Query: 381 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 202
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 201 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 22
           S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 21  VTNAAAR 1
           VTN  AR
Sbjct: 120 VTNKLAR 126


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  169 bits (412), Expect = 7e-43
 Identities = 82/122 (67%), Positives = 97/122 (79%)
 Frame = -1

Query: 381 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 202
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 201 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 22
           S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 21  VT 16
           ++
Sbjct: 120 IS 121


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  151 bits (365), Expect = 3e-37
 Identities = 70/95 (73%), Positives = 80/95 (84%)
 Frame = -1

Query: 285 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 106
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 105 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 1
            YCAEIAH VS+KKRK IVERA QL I VTN  AR
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193



 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -1

Query: 381 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 289
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  133 bits (322), Expect = 5e-32
 Identities = 62/96 (64%), Positives = 76/96 (79%)
 Frame = -1

Query: 393 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 214
           +TY+M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377

Query: 213 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 106
           IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413


>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -1

Query: 291 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 130
           + N +K +G D   +    G    P      ++K+R +  NGFRKV     HN   L   
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305

Query: 129 EILMMQNRKYCAEIAH 82
           ++L+  N KY A   H
Sbjct: 306 DLLIFSNEKYMAVSLH 321


>08_02_1238 + 25486263-25487574,25488210-25489117
          Length = 739

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +1

Query: 40  GSFHDQLPLL----RRDTMSDLCAVLPVLHHQ 123
           G+ H+Q P L    RRD ++D+ A L  +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497


>03_05_0796 + 27787401-27788831
          Length = 476

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  EAEADRGKSPAAQHQSDECGR 5
           + ++D GK    QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 299 TNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQMDSVR 156
           +N+R + + ++  TTE  G    +T   TL+ + T++ V+  Q   ++
Sbjct: 559 SNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIK 606


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -2

Query: 419 RGSLSRF*KKHTRWL*DLFTGRQSSKRGRRD---LSGINRIAMTNLRGIGVNLEVLTTES 249
           R ++S   +KH ++L ++   + +  R   +   LSG    +M  L      L VL  ++
Sbjct: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQT 240

Query: 248 AGGSRVNT*CP 216
            GGS +NT  P
Sbjct: 241 GGGSLMNTSAP 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,273
Number of Sequences: 37544
Number of extensions: 233755
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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