BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k20r (444 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 177 4e-45 09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 7e-43 08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 151 3e-37 09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 133 5e-32 01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 2.9 08_02_1238 + 25486263-25487574,25488210-25489117 27 6.8 03_05_0796 + 27787401-27788831 27 6.8 11_06_0513 + 24466131-24469487 27 9.0 10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 27 9.0 >09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 Length = 133 Score = 177 bits (430), Expect = 4e-45 Identities = 87/127 (68%), Positives = 100/127 (78%) Frame = -1 Query: 381 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 202 MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59 Query: 201 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 22 S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119 Query: 21 VTNAAAR 1 VTN AR Sbjct: 120 VTNKLAR 126 >09_04_0633 - 19123930-19124009,19124240-19124344,19124453-19124543, 19124647-19124709,19126318-19126368,19126878-19126962, 19127102-19127283,19128493-19128582 Length = 248 Score = 169 bits (412), Expect = 7e-43 Identities = 82/122 (67%), Positives = 97/122 (79%) Frame = -1 Query: 381 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 202 MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59 Query: 201 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 22 S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119 Query: 21 VT 16 ++ Sbjct: 120 IS 121 >08_02_1315 + 26083856-26083945,26084093-26084226,26084753-26084819, 26085011-26085192,26085315-26085444 Length = 200 Score = 151 bits (365), Expect = 3e-37 Identities = 70/95 (73%), Positives = 80/95 (84%) Frame = -1 Query: 285 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 106 +WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158 Query: 105 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 1 YCAEIAH VS+KKRK IVERA QL I VTN AR Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193 Score = 29.9 bits (64), Expect = 0.96 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -1 Query: 381 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 289 MA+ P+ IVKKR K+F R SDRY LK Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30 >09_04_0630 + 19104678-19105463,19106169-19106348,19107775-19107864, 19108777-19108958,19109968-19109974,19111763-19111833, 19112188-19112224,19112433-19112603 Length = 507 Score = 133 bits (322), Expect = 5e-32 Identities = 62/96 (64%), Positives = 76/96 (79%) Frame = -1 Query: 393 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 214 +TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377 Query: 213 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 106 IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413 >01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305, 37887397-37887471,37887543-37887734,37887922-37888173, 37888248-37888803,37888881-37889088,37889624-37889736, 37890029-37890060,37890545-37890619 Length = 1368 Score = 28.3 bits (60), Expect = 2.9 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -1 Query: 291 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 130 + N +K +G D + G P ++K+R + NGFRKV HN L Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305 Query: 129 EILMMQNRKYCAEIAH 82 ++L+ N KY A H Sbjct: 306 DLLIFSNEKYMAVSLH 321 >08_02_1238 + 25486263-25487574,25488210-25489117 Length = 739 Score = 27.1 bits (57), Expect = 6.8 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%) Frame = +1 Query: 40 GSFHDQLPLL----RRDTMSDLCAVLPVLHHQ 123 G+ H+Q P L RRD ++D+ A L +HH+ Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497 >03_05_0796 + 27787401-27788831 Length = 476 Score = 27.1 bits (57), Expect = 6.8 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -3 Query: 67 EAEADRGKSPAAQHQSDECGR 5 + ++D GK QH+ DECG+ Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413 >11_06_0513 + 24466131-24469487 Length = 1118 Score = 26.6 bits (56), Expect = 9.0 Identities = 12/48 (25%), Positives = 26/48 (54%) Frame = -2 Query: 299 TNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQMDSVR 156 +N+R + + ++ TTE G +T TL+ + T++ V+ Q ++ Sbjct: 559 SNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIK 606 >10_08_0961 + 21869612-21869773,21869869-21869956,21870047-21870277, 21870371-21870538,21870808-21871001,21871151-21871234, 21871315-21871434,21871621-21871714,21871813-21871973, 21873237-21873313,21873738-21873932,21874487-21874559, 21874635-21874721,21874906-21875043,21875181-21875383, 21875469-21875631,21875861-21875992 Length = 789 Score = 26.6 bits (56), Expect = 9.0 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = -2 Query: 419 RGSLSRF*KKHTRWL*DLFTGRQSSKRGRRD---LSGINRIAMTNLRGIGVNLEVLTTES 249 R ++S +KH ++L ++ + + R + LSG +M L L VL ++ Sbjct: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQT 240 Query: 248 AGGSRVNT*CP 216 GGS +NT P Sbjct: 241 GGGSLMNTSAP 251 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,516,273 Number of Sequences: 37544 Number of extensions: 233755 Number of successful extensions: 737 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 737 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 847740284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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