Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k20r
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             207   4e-54
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   4.0  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  27   5.3  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   7.0  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  207 bits (505), Expect = 4e-54
 Identities = 94/125 (75%), Positives = 110/125 (88%)
 Frame = -1

Query: 375 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 196
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 195 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 16
           KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 15  NAAAR 1
           N+ AR
Sbjct: 122 NSNAR 126


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -1

Query: 390 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 211
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 210 GYGSNKKTRHMLPNGFRKV 154
           G  S K  R +L   F ++
Sbjct: 72  GRLSAKPERDVLMQDFAQI 90


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -2

Query: 332 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 237
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 441 FSCGRVTAWFTVAFLK 394
           FSCG V A+FTVAF K
Sbjct: 581 FSCGSVVAFFTVAFSK 596


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 181 MTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRP 339
           M G  + T+T++   H+V  L +EP A  ++ T++FTP  + F+ A  +     +RP
Sbjct: 498 MYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGINDIRP 553


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 22  SDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 120
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 253 SPQAVQGSILDAQHWLRFQQE 191
           SP+A+QG ++ AQ W   +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  SASASSKRHHERSLRSTSCFASSRFPAL*HCEL 152
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 205  VTNVGHQVLTLEPPA---DSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSY 375
            V N+G + +  EPP     SVV+ S  T  PL FV++  + P  +L  L ++C   NR +
Sbjct: 3146 VNNLGSKFV--EPPVLDMSSVVDDSS-TRTPLIFVLSPGVDPTSALLQLAENCGMSNRFH 3202

Query: 376  S 378
            +
Sbjct: 3203 A 3203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,979,408
Number of Sequences: 59808
Number of extensions: 256337
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)