Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k19r
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        54   8e-08
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   5e-04
SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)                    29   3.5  
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)             28   4.6  
SB_19354| Best HMM Match : MPPN (HMM E-Value=2.9)                      27   8.1  
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)                    27   8.1  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
 Frame = -1

Query: 416 EVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADAC 237
           E+ ++PC     C   KG N      F P    +     +FG+  G ++PF  L N + C
Sbjct: 37  ELDLEPC-EEEPCTFHKGSNETCKATFVPNELVSSATIEVFGIIGGVQVPFP-LKNPNVC 94

Query: 236 TL--TSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNESQMC 99
                 CP  AG + TLD ++++    P+     K++L   DN+   C
Sbjct: 95  ENHGVKCPINAGDSATLDLNIYVSNLYPSLKLIIKFELKGGDNKLVFC 142


>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
 Frame = -1

Query: 407 IDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTL- 231
           I PC +S  C LK+G +   S  F P     + K     + +  ++P      +DAC   
Sbjct: 40  ISPC-DSEPCVLKRGTSVDGSLTFIPHEDLKRAKLSAHAIID--KLPLPLPIPSDACQGY 96

Query: 230 -TSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNESQMCCYRTNVRL 75
             SCP ++G          I  + P GN   K  + + D    + C+  ++ +
Sbjct: 97  GLSCPVDSGVKSMFKIHQAIESEFPVGNLTLKAAVTDSDTSQVVFCFEVDLEI 149


>SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)
          Length = 491

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 476 FNVVTTRLCREVDASACT--VNEVRIDPCVNSRLCHLKKGKNA 354
           F    T+LC  +  S CT   +   I+P V SRL  L KG+ A
Sbjct: 32  FKQSATKLCDAMTKSLCTKYFDPETIEPLVASRLIPLDKGEGA 74


>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
          Length = 488

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = -1

Query: 458 RLCREVDASACTVNEVRIDPC--VNSRLCHLKKGKNAKVSFDFTPQF-STTKLKTGLFGL 288
           +L    D      N+  +D C  V+S L   + GK    +        S + + +G  G+
Sbjct: 204 QLTEHADCVLPIENQALVDICNKVSSSLPPSRPGKRVMATDSSHSHVKSNSAITSGEGGI 263

Query: 287 KNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLH 177
             GA+ PFDA+ N  A  + +  + A    +L+  L+
Sbjct: 264 TKGADKPFDAMNNIVANLILNMTSSARFEGSLNVDLN 300


>SB_19354| Best HMM Match : MPPN (HMM E-Value=2.9)
          Length = 290

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 149 FEFKWKLWNEDNESQMCC 96
           ++FK  L N+DN+ Q+CC
Sbjct: 259 YDFKLFLSNDDNKKQLCC 276


>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
          Length = 1442

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -1

Query: 476 FNVVTTRLCREVDA---SACT--VNEVRIDPCVNSRLCHLKKGKNA 354
           FN   T+LC  +     S CT  ++   I+P V SRL  L KG+ A
Sbjct: 96  FNQSATKLCDAIATMTKSLCTKYIDPKTIEPLVASRLIPLDKGEGA 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,739,793
Number of Sequences: 59808
Number of extensions: 391171
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)