Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k19r
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w... 30 1.2
At5g01730.1 68418.m00091 expressed protein 29 2.9
At2g46370.2 68415.m05771 auxin-responsive GH3 family protein sim... 29 2.9
At2g46370.1 68415.m05770 auxin-responsive GH3 family protein sim... 29 2.9
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta... 28 3.8
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 28 3.8
At1g64140.1 68414.m07266 expressed protein similar to putative d... 28 3.8
At3g50720.1 68416.m05549 protein kinase, putative similar to pro... 27 8.7
>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
similarity to cell cycle checkpoint protein RAD17 [Homo
sapiens] GI:4102916
Length = 599
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/102 (23%), Positives = 44/102 (43%)
Frame = -1
Query: 467 VTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGL 288
V R+CRE C V + ID + ++ + F P+ + TK+K+ G+
Sbjct: 298 VLQRICRE---EHCKVTTMEIDQMATASGGDIRHAITSLQLFSVKPELNHTKIKSPRPGM 354
Query: 287 KNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGKKL 162
++ +Y+ ++SC G+ +TL +GK L
Sbjct: 355 EDNYHGNEQTMYSGLDSGISSC---FGRDETLSLFHALGKFL 393
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 28.7 bits (61), Expect = 2.9
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = -1
Query: 446 EVDASACTVNEVRIDPCVN-SRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEI 270
+ +A AC V EVR DP +N S HL K +V D + +F ++ +EI
Sbjct: 526 KANAEACEVFEVRRDPMLNISPETHLL--KVTQVPQDAYEGGTNDVHSQHVFSVETASEI 583
Query: 269 PFDALYNADACTLTSCPTEAGKTQTLDFSLHIGKKLP 159
AL ++T+ EA +++ D S G +P
Sbjct: 584 SVSALVEDQFSSITNQEIEALESE--DISSEAGHFIP 618
>At2g46370.2 68415.m05771 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 575
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 206 KTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNES--QMCC 96
K + +DFS +I G++ W++ E NE Q CC
Sbjct: 456 KIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 494
>At2g46370.1 68415.m05770 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 575
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 206 KTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNES--QMCC 96
K + +DFS +I G++ W++ E NE Q CC
Sbjct: 456 KIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 494
>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
metalloproteinase [Arabidopsis thaliana] GI:3128477;
contains InterPro accession IPR001818: Matrixin
Length = 364
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 350 VSFDFTPQFSTTKLKTGLFGLKNGAEIPFDAL 255
VSF+ F+T LK G + +G +PFD +
Sbjct: 199 VSFEEVDDFTTADLKIGFYAGDHGDGLPFDGV 230
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 281 GAEIPFDALYNADACTLTSCPTE 213
G EI F+ +YN D T T PTE
Sbjct: 241 GREIRFEEVYNEDVQTRTKAPTE 263
>At1g64140.1 68414.m07266 expressed protein similar to putative
disease resistance protein GB:CAB40943 GI:4586107 from
[Arabidopsis thaliana]; weak similarity to Loricrin
(Swiss-Prot:P23490) [Homo sapiens]
Length = 646
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -1
Query: 251 NADACTLTSCPTEAGKTQT----LDFSLHIGKKLPTGN 150
+A ACT S E + + LDFSLH+G + PT +
Sbjct: 84 SATACTSLSSARETEEASSMDIELDFSLHLGNEKPTAS 121
>At3g50720.1 68416.m05549 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 377
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 316 LNSRPASLG*RMALKFLLMLSTMLTLAHSRHV 221
LNSRP+ L +++L F L +S + HS+ +
Sbjct: 138 LNSRPSPLDLKVSLSFALDISRAMEYLHSKGI 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,755,240
Number of Sequences: 28952
Number of extensions: 264123
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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