Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k19f
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +2

Query: 413 ETLNSNGSFGMKTMRARCAATERMS----GLFSKHKKQLLTDCIVNTLCMYLHKKCETHS 580
           +T  S+      T   +C + E +S     L   H + +   C    LC YL+K+ E H+
Sbjct: 284 QTKGSDAELICVTTGTKCVSGEHLSVSGGALNDCHAEVVARRC----LCEYLYKQLELHT 339


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 220 SFDFTPQFSTTKLKTGLFGLKNG 288
           +FD+ P+++   +    F LKNG
Sbjct: 228 TFDYDPRYAKMTIDGESFTLKNG 250


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 218 TFAFFPFLRWHSRLLTQGSIR 156
           T+A F ++ WH + L +   R
Sbjct: 246 TYAIFLYISWHQKELVRRDSR 266


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 CQACLVNTKNNCSQIA**TRCVCT 554
           CQ C+ N  +N  +I   T+C  T
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKAT 568


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 CQACLVNTKNNCSQIA**TRCVCT 554
           CQ C+ N  +N  +I   T+C  T
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKAT 568


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 CQACLVNTKNNCSQIA**TRCVCT 554
           CQ C+ N  +N  +I   T+C  T
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKAT 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,140
Number of Sequences: 438
Number of extensions: 3698
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)