Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18r
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.97 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    28   1.7  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   5.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.0  
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac...    25   9.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   9.0  

>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 296 GFQTILIFG-GSSFVPALAAMATEFPP 373
           G  TI +FG G  F+P L AM   FPP
Sbjct: 454 GLTTIFMFGSGFLFLPPLIAMQATFPP 480


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 45  ITYQQSSIKELKKTTINIKNVWN 113
           I+Y++S  KEL+KT  ++ N+W+
Sbjct: 310 ISYKESDKKELEKTVDSLFNIWS 332


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 369 GNSVAIAARAGTKLLPPKIKIVWNP 295
           GNS    A+A T L  P  K++WNP
Sbjct: 93  GNSHLEKAQAATDLEYPVTKLLWNP 117


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 474 RCLVRELEPARSTCGR-RLLTPEAR*SPAPN 563
           RCL    E    TCGR RL  P A  +P P+
Sbjct: 611 RCLEASFEELPCTCGRTRLYPPVACGTPIPD 641


>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 333 KLLPPKIKIVWN 298
           KL+PP++K +WN
Sbjct: 48  KLIPPRLKTIWN 59


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 57  QSSIKELKKTTINIKNVWN 113
           +S + EL  T   +KNVWN
Sbjct: 647 ESPVNELNSTMEEVKNVWN 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,104
Number of Sequences: 5004
Number of extensions: 50625
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)