Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18r
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1132 - 27883151-27883777                                         30   1.8  
03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853...    30   2.3  
08_02_0124 - 12823791-12824213                                         29   5.4  
04_04_0323 - 24392043-24393021,24393135-24393544                       28   7.1  
03_05_0867 - 28381891-28383018                                         28   7.1  
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443...    28   9.4  
07_01_1075 + 9606299-9606718                                           28   9.4  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    28   9.4  

>06_03_1132 - 27883151-27883777
          Length = 208

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 583 C*GIIVRLGAGLHRASGVRSRRPQVERAGSSSRTRHRYRPSSAR 452
           C G++V  GA L   +G R   P+  R+GS  R RH   P ++R
Sbjct: 103 CEGLLVSEGA-LLGCAGSRPPPPRASRSGSRRRHRHSLLPRASR 145


>03_05_0999 -
           29583959-29584711,29584797-29585021,29585163-29585360,
           29585472-29586056
          Length = 586

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 433 SVSVVIGGRCLVGSGVLCVSWSPRAPLAAGG 525
           + SV +G   ++G  VLC++W   A    GG
Sbjct: 503 ATSVALGAGAIIGGSVLCLAWGLFATFVRGG 533


>08_02_0124 - 12823791-12824213
          Length = 140

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 569 NDSLTSISRTAKAVASGADRFS*QGASGAVGGLTKA---RARAVPVAEFSPKS 718
           ND+  + +RT ++  SGA+    +  + AVG        R+  VP AE  PKS
Sbjct: 51  NDTAAAPARTRRSAGSGAEEKPVRRTAAAVGKKKDGRGLRSMLVPAAEKGPKS 103


>04_04_0323 - 24392043-24393021,24393135-24393544
          Length = 462

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 542 SVKPRSQSDNDSLTSISRTAKAVASGADRFS*QGASGAVGGL 667
           + KP + +D+ S TS SRTA A +S +   +   +S    G+
Sbjct: 234 ATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAAGV 275


>03_05_0867 - 28381891-28383018
          Length = 375

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -2

Query: 660 PTAPLAPCQLNLSAPEATAFAVRLIDVK 577
           PTAPL P   + SAP A A A R + VK
Sbjct: 25  PTAPLLPHADDPSAPPAAAAAARKLPVK 52


>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
            4430555-4432052,4432199-4432217,4432469-4432675,
            4432814-4433065
          Length = 1363

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 293  GGFQTILIFGGSSFVPALAAMATEFPPHNDKRHA-GFFASDTYTSNLQASVL 445
            G    +++ GGSS +P L +M  +F      RH+     +  Y + +QAS+L
Sbjct: 991  GDVHDVVLVGGSSRIPKLQSMLHDFFQEKKLRHSVNPDEAVAYGAAIQASIL 1042


>07_01_1075 + 9606299-9606718
          Length = 139

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = -2

Query: 741 LCGRTNKKDLGLNSATGTALALALVRPPTAPLAPCQLNLSAPEATAFAVRLIDVKESLSD 562
           L  R N   +  +    + + L  + PP+AP+ P  +   A    A A    D+++ + D
Sbjct: 45  LLARANGGTISSDDNVWSFVQLTALPPPSAPVFPSHIATGASRTWAPAATAFDLRDGVVD 104

Query: 561 WERGFTELQASGAAGRKW 508
              G  E    G+    W
Sbjct: 105 ---GNAEWSDGGSVVHAW 119


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 565 RLGAGLHRASGVRSRRPQVERAGSSSRT-RHRYRPSSA 455
           R GAG   ASG  S++P+V  A S + + R + RP ++
Sbjct: 698 RGGAGAGAASGSASKKPRVSTAASYAESLRSKLRPDAS 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,415,094
Number of Sequences: 37544
Number of extensions: 412863
Number of successful extensions: 1358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)