Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18r
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            31   1.0  
SB_25512| Best HMM Match : PAP2 (HMM E-Value=2)                        30   1.8  
SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_57817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_11101| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 756 NXSSLLCGRTNKKDLGLNSATG-TALALALVRPPTA--PLAPCQLNLSAPE-ATAFAV 595
           N S  + G T+      NS T  TA  LA V+P  A  PLA  QL ++AP  ATA +V
Sbjct: 667 NGSPTIIGTTSGSPTTSNSPTSATAPPLAAVQPTVAAPPLAAVQLPVAAPPLATALSV 724


>SB_25512| Best HMM Match : PAP2 (HMM E-Value=2)
          Length = 231

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +1

Query: 445 VIGGRCLVGSGVLCVSWSPRAPLAAGGS*RLKLGEAPLPIGQ*FLNINKSNGKSGGFR 618
           +IG   L G+G L +S+ PR P        +K     L     F N +  NG   GFR
Sbjct: 23  IIGMVTLYGAGALVLSYVPRVPKTNPAGKEIKETREELNRDNKFANGHAGNGYVNGFR 80


>SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 660 PTAPLAPCQLNLSAPEATA-FAVRLIDVKESLSDWE 556
           P+ P  PC+   SAP A++   + L+D++++   WE
Sbjct: 89  PSPPPPPCEYQQSAPGASSDKLMTLVDLQKACGSWE 124


>SB_57817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 412 HVHKQFTSVSVVIGGRCLVGSGVLCVSWSPRAP 510
           +  +Q+  VSV+    CL G G LC     R P
Sbjct: 32  YFQRQYNGVSVIPSNACLTGCGALCFGEYFRCP 64


>SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 499 PRAPLAAGGS*RLKLGEAPLPIGQ*FLNINKSNGKSGGFR 618
           PR P+A   S  + LG A   +GQ  + +N+ N  +G F+
Sbjct: 54  PRTPVAPSTSPAVSLGPAAGGMGQGVMGMNQGNAMAGQFQ 93


>SB_11101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 412 HVHKQFTSVSVVIGGRCLVGSGVLCVSWSPRAP 510
           +  +Q+  VSV+    CL G G LC     R P
Sbjct: 32  YFQRQYNGVSVIPSNACLTGCGALCFGEYFRCP 64


>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 418 VRV*C--EESSMAFVVMWWELGGHRCKSWNEAAAAEDQD 308
           VR+ C  + S+   ++ WW   G++C S +      DQD
Sbjct: 711 VRMACPIKSSNPPPMIQWWHASGYKCSSDDHDCGPRDQD 749


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,257,580
Number of Sequences: 59808
Number of extensions: 402687
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)