BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k18r (769 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 25 1.9 CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein. 25 2.6 AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta... 25 2.6 >AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase protein. Length = 1222 Score = 25.4 bits (53), Expect = 1.9 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = -2 Query: 696 TGTALA-LALVRPPTAPLAPCQLNL-SAPEATAFAVRLIDVKESLSDWERGFTELQASGA 523 TG ALA L R A C L +AP A+ +RL + + + +W+R + A+ Sbjct: 836 TGVALAGLVPFRLLVREDARCHRRLLAAPGASRKDIRLEERQGTFQEWQRAWDAAAAAPT 895 Query: 522 AGR 514 A R Sbjct: 896 ASR 898 >CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein. Length = 1664 Score = 25.0 bits (52), Expect = 2.6 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 562 LGAGLHRASGVRSRRPQVERAGSSSRTRHRYRPSS 458 +G G+HR V S + AGSSS T P S Sbjct: 973 VGGGMHRTPTVASMMTFMPAAGSSSGTATTRIPDS 1007 >AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing phosphoprotein protein. Length = 1200 Score = 25.0 bits (52), Expect = 2.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 586 NKSNGKSGGFRS*QIQLTRRQWSSRRPHQGKSEGRSGS 699 ++S SGG RS +R Q + R +S RSGS Sbjct: 1117 SRSRSGSGGSRSRSRSRSRSQSAGSRKSGSRSRSRSGS 1154 Score = 24.2 bits (50), Expect = 4.5 Identities = 23/60 (38%), Positives = 25/60 (41%) Frame = -1 Query: 637 SAESVSSGSHRFCRSTY*C*GIIVRLGAGLHRASGVRSRRPQVERAGSSSRTRHRYRPSS 458 S E S GS R RS R G+G S S RAGS SR+R R R S Sbjct: 1053 SDEEDSDGSQRRSRSRS-------RSGSGSRSRSRSGSGSRAGSRAGSGSRSRSRSRSRS 1105 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 716,225 Number of Sequences: 2352 Number of extensions: 14429 Number of successful extensions: 227 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 224 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 227 length of database: 563,979 effective HSP length: 63 effective length of database: 415,803 effective search space used: 79834176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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