Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18r
         (769 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   1.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.6  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.6  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 696  TGTALA-LALVRPPTAPLAPCQLNL-SAPEATAFAVRLIDVKESLSDWERGFTELQASGA 523
            TG ALA L   R      A C   L +AP A+   +RL + + +  +W+R +    A+  
Sbjct: 836  TGVALAGLVPFRLLVREDARCHRRLLAAPGASRKDIRLEERQGTFQEWQRAWDAAAAAPT 895

Query: 522  AGR 514
            A R
Sbjct: 896  ASR 898


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 562  LGAGLHRASGVRSRRPQVERAGSSSRTRHRYRPSS 458
            +G G+HR   V S    +  AGSSS T     P S
Sbjct: 973  VGGGMHRTPTVASMMTFMPAAGSSSGTATTRIPDS 1007


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 586  NKSNGKSGGFRS*QIQLTRRQWSSRRPHQGKSEGRSGS 699
            ++S   SGG RS     +R Q +  R    +S  RSGS
Sbjct: 1117 SRSRSGSGGSRSRSRSRSRSQSAGSRKSGSRSRSRSGS 1154



 Score = 24.2 bits (50), Expect = 4.5
 Identities = 23/60 (38%), Positives = 25/60 (41%)
 Frame = -1

Query: 637  SAESVSSGSHRFCRSTY*C*GIIVRLGAGLHRASGVRSRRPQVERAGSSSRTRHRYRPSS 458
            S E  S GS R  RS         R G+G    S   S      RAGS SR+R R R  S
Sbjct: 1053 SDEEDSDGSQRRSRSRS-------RSGSGSRSRSRSGSGSRAGSRAGSGSRSRSRSRSRS 1105


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,225
Number of Sequences: 2352
Number of extensions: 14429
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)