Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18r
         (769 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY226546-1|AAO47372.1|  531|Drosophila melanogaster pickpocket 1...    31   2.3  
AE014134-1694|ABC65884.1|  531|Drosophila melanogaster CG34059-P...    31   2.3  
AF068271-1|AAC19245.1|  893|Drosophila melanogaster mutL homolog...    30   4.0  
AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD1916...    29   9.3  
AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA, ...    29   9.3  

>AY226546-1|AAO47372.1|  531|Drosophila melanogaster pickpocket 16
           protein.
          Length = 531

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 165 FHNKKFSIC-CLRTNCIIHSKR 103
           ++N  + +C  L+TNCIIHSKR
Sbjct: 385 YNNGSYKVCGVLQTNCIIHSKR 406


>AE014134-1694|ABC65884.1|  531|Drosophila melanogaster CG34059-PA
           protein.
          Length = 531

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 165 FHNKKFSIC-CLRTNCIIHSKR 103
           ++N  + +C  L+TNCIIHSKR
Sbjct: 385 YNNGSYKVCGVLQTNCIIHSKR 406


>AF068271-1|AAC19245.1|  893|Drosophila melanogaster mutL homolog
           PMS2 protein.
          Length = 893

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 409 RHVHKQFTSVSVVIGGRCLVGSGV--LCVSWSPRAP 510
           R++ K+FT +  ++   CLV  GV  LC + +P+ P
Sbjct: 186 RNIKKEFTKMCQILQAYCLVTKGVRILCSNHTPKGP 221


>AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD19168
           protein.
          Length = 1260

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 557 SQSDNDSLTSISRTAKAVASGADRFS*QGASGAVGGLT-KARARAV 691
           S+S  DS  S S ++ A  S +D    +GA GAVG  T + + RA+
Sbjct: 401 SESSADSSESSSSSSTASDSSSDNEDGEGAGGAVGSPTNRLKHRAI 446


>AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA,
           isoform A protein.
          Length = 1260

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 557 SQSDNDSLTSISRTAKAVASGADRFS*QGASGAVGGLT-KARARAV 691
           S+S  DS  S S ++ A  S +D    +GA GAVG  T + + RA+
Sbjct: 401 SESSADSSESSSSSSTASDSSSDNEDGEGAGGAVGSPTNRLKHRAI 446


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,555,803
Number of Sequences: 53049
Number of extensions: 637900
Number of successful extensions: 1926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1926
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)