Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18r
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L08403-1|AAA28025.1|  810|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z49128-3|CAA88958.2|  855|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain int...    29   4.8  
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    28   8.4  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    28   8.4  

>L08403-1|AAA28025.1|  810|Caenorhabditis elegans Hypothetical
           protein F42H10.5 protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 703 LRYRNGPRSCLGEASDCSTGALSAESVSSGS 611
           L+ +N PR     AS C+T + ++ SVSSGS
Sbjct: 130 LQTQNTPRQTGSPASTCNTNSNTSSSVSSGS 160


>Z49128-3|CAA88958.2|  855|Caenorhabditis elegans Hypothetical
           protein M03C11.3 protein.
          Length = 855

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -3

Query: 614 KPPLLPFDLLMLRNHCPIGS----GASPSFRRQEPPAASGARGLQLTHKTPLP 468
           KP LL F  L+L+N+  I +      S +FR  E P+++G+ G     K P P
Sbjct: 123 KPNLL-FRRLLLKNYEKIHNFPTISTSTNFRDSEQPSSNGSHGGTTARKKPYP 174


>U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform b protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 717 DLGLNSATGTALALALVRPPTAPLAPCQLNLSAPEATAFAVR 592
           DL   S      AL ++ PP A L   QLNL+AP A  F+++
Sbjct: 12  DLNSRSPKTIDEALRILAPPQALLVQSQLNLTAP-ANPFSIQ 52


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 551 PRSQSDNDSLTSISRTAKAVASGADRFS*QGASGAVGGLTKARARAVPVAE 703
           P+   D+  L    R  K   + A   S  GA+GA GG T   A   P A+
Sbjct: 437 PQESDDDSDLEDEEREKKKKKASASA-SGAGAAGAAGGATGGAASGAPSAQ 486


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 551 PRSQSDNDSLTSISRTAKAVASGADRFS*QGASGAVGGLTKARARAVPVAE 703
           P+   D+  L    R  K   + A   S  GA+GA GG T   A   P A+
Sbjct: 437 PQESDDDSDLEDEEREKKKKKASASA-SGAGAAGAAGGATGGAASGAPSAQ 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,886
Number of Sequences: 27780
Number of extensions: 301942
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)