Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18f
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.56 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    28   1.3  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   1.7  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   3.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.9  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 24  RRTPASLVRAKMSSIRNTNVYLQRLFEAILFFTYYS*RQ*KKSLK 158
           +R+P+SL +   +S R++  +LQRLF +  F    S R    S+K
Sbjct: 21  KRSPSSLSQRSKTSTRSSKPFLQRLFPSTWFKNESSSRHPLTSIK 65


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 283 FYFLVLLVLHSLAKANSSSLLCGRTNKKDLGLNSATGTALAL 408
           +YFL+ LVL  +A  +   + CG     D+   +  G  LA+
Sbjct: 174 YYFLLSLVLLYIASISLGRIYCGMHGFMDVSTGTILGVTLAI 215


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 5   SRFSRVEAYARFVSSRQNVINSKYERISTTII*SNSLFYILFLTSVEK 148
           +R   ++A+  F+++R + INS  E+  TT     S F ILF   +++
Sbjct: 416 ARIEGIKAHEMFLNNRVSEINSSLEKQLTTQKELRSRFEILFPVKLQR 463


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 26   AYARFVSSRQNVINSKYERISTTII*SNSLFY-ILFLTSVEKIVEVIRENCHVHV 187
            A A  VS+ + + +   +++ T I  ++ L +  L L   EKIV    +NC++H+
Sbjct: 1017 ALANIVSNTKELTDGGTKKLQTLITFNDGLDWSYLNLVGGEKIVPKCGKNCYLHL 1071


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 610 RCLVRELEPARSTCGR-RLLTPEAR*SPAPN 521
           RCL    E    TCGR RL  P A  +P P+
Sbjct: 611 RCLEASFEELPCTCGRTRLYPPVACGTPIPD 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,819
Number of Sequences: 5004
Number of extensions: 51894
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)