Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k18f
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0794 + 23206796-23207590,23207620-23208148,23208444-232084... 33 0.14
06_03_1132 - 27883151-27883777 30 1.3
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 30 1.8
02_05_0171 - 26441007-26441918 30 1.8
08_02_0124 - 12823791-12824213 29 4.1
04_04_0323 - 24392043-24393021,24393135-24393544 28 5.4
03_05_0867 - 28381891-28383018 28 5.4
07_01_1075 + 9606299-9606718 28 7.1
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 27 9.4
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 27 9.4
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31... 27 9.4
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 27 9.4
>12_02_0794 +
23206796-23207590,23207620-23208148,23208444-23208468,
23208775-23208837,23209136-23209157,23209369-23209482
Length = 515
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/109 (19%), Positives = 45/109 (41%)
Frame = +1
Query: 259 VIKNMVRGFYFLVLLVLHSLAKANSSSLLCGRTNKKDLGLNSATGTALALALVRPPTAPL 438
++K+ G Y+LV + + + A + ++L ++D + + +G+ L P +PL
Sbjct: 374 LLKDGDNGLYWLVEVDMRNKAMISPAALYINEEEEEDAAVTTRSGSLLMAITSSPAGSPL 433
Query: 439 APCQLNLSAPEATAFAVRLIDVKESLSDWERGFTELQASGAAGRKWSAR 585
++ F R + + +ER ++ RKW R
Sbjct: 434 ICTRIPSRVQLVELFICRQLSQMMQKTKYERTMHKIARKVRCDRKWGTR 482
>06_03_1132 - 27883151-27883777
Length = 208
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 501 C*GIIVRLGAGLHRASGVRSRRPQVERAGSSSRTRHRYRPXSAR 632
C G++V GA L +G R P+ R+GS R RH P ++R
Sbjct: 103 CEGLLVSEGA-LLGCAGSRPPPPRASRSGSRRRHRHSLLPRASR 145
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 197 LTAQHAHGNFHESLQRFFLLTLRII 123
L+A H G F E+LQR FLLT +++
Sbjct: 912 LSAHHQSGGFVEALQRCFLLTPKLL 936
>02_05_0171 - 26441007-26441918
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 313 SLAKANSSSLLCGRTNKKDLGLNSATGTALALALVRPPTAPL-APCQLNLSA 465
S + ++SSS G ++ G A ++A+ALV PP P AP QL L A
Sbjct: 240 SSSSSSSSSSSSGSPKRRKRG--EAAAASMAMALVPPPPPPAQAPVQLALPA 289
>08_02_0124 - 12823791-12824213
Length = 140
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 515 NDSLTSISRTAKAVASGADRFS*QGASGAVGGLTKA---RARAVPVAEFSPKS 366
ND+ + +RT ++ SGA+ + + AVG R+ VP AE PKS
Sbjct: 51 NDTAAAPARTRRSAGSGAEEKPVRRTAAAVGKKKDGRGLRSMLVPAAEKGPKS 103
>04_04_0323 - 24392043-24393021,24393135-24393544
Length = 462
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 542 SVKPRSQSDNDSLTSISRTAKAVASGADRFS*QGASGAVGGL 417
+ KP + +D+ S TS SRTA A +S + + +S G+
Sbjct: 234 ATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAAGV 275
>03_05_0867 - 28381891-28383018
Length = 375
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 424 PTAPLAPCQLNLSAPEATAFAVRLIDVK 507
PTAPL P + SAP A A A R + VK
Sbjct: 25 PTAPLLPHADDPSAPPAAAAAARKLPVK 52
>07_01_1075 + 9606299-9606718
Length = 139
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +1
Query: 343 LCGRTNKKDLGLNSATGTALALALVRPPTAPLAPCQLNLSAPEATAFAVRLIDVKESLSD 522
L R N + + + + L + PP+AP+ P + A A A D+++ + D
Sbjct: 45 LLARANGGTISSDDNVWSFVQLTALPPPSAPVFPSHIATGASRTWAPAATAFDLRDGVVD 104
Query: 523 WERGFTELQASGAAGRKW 576
G E G+ W
Sbjct: 105 ---GNAEWSDGGSVVHAW 119
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 503 LRNHC-PIGSGASPSFRRQEPPAASGARGLQLTHKTPLPTXQRP 631
LR+ C P S ASP++ R AAS + +L + LP + P
Sbjct: 61 LRSPCLPAPSAASPAYPRLASSAASASAPARLRSRITLPGGRSP 104
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 519 RLGAGLHRASGVRSRRPQVERAGSSSRT-RHRYRPXSA 629
R GAG ASG S++P+V A S + + R + RP ++
Sbjct: 698 RGGAGAGAASGSASKKPRVSTAASYAESLRSKLRPDAS 735
>02_01_0046 -
311752-312138,312220-312372,312458-312653,312702-312792,
312808-313228
Length = 415
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 266 LITENSHALNKTYNTNCVHCKKKLTAQHAHGNFHESLQRFFLLT 135
+++ +S A+N C K LT Q A G F S FFL++
Sbjct: 230 VLSSDSEAVNIPMLPTKFLCLKHLTIQIARGTFSPSYDYFFLVS 273
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 507 LNINKSNGKSG----GFRS*QIQLTRRQWSSRRPHQGKSEGRSGSGVQS*VLLV 358
L++ K G G G R +I + Q RRP +GK R GSG+ + ++LV
Sbjct: 260 LSLKKMTGIYGDWLEGAREMRIWCSLVQVKRRRPEEGKRGRRMGSGIGAVLVLV 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,214
Number of Sequences: 37544
Number of extensions: 369091
Number of successful extensions: 1205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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