Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18f
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            31   0.59 
SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      28   7.2  
SB_37036| Best HMM Match : Cu_bind_like (HMM E-Value=5.5)              27   9.6  
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 328 NSSSLLCGRTNKKDLGLNSATG-TALALALVRPPTA--PLAPCQLNLSAPE-ATAFAV 489
           N S  + G T+      NS T  TA  LA V+P  A  PLA  QL ++AP  ATA +V
Sbjct: 667 NGSPTIIGTTSGSPTTSNSPTSATAPPLAAVQPTVAAPPLAAVQLPVAAPPLATALSV 724


>SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 424 PTAPLAPCQLNLSAPEATA-FAVRLIDVKESLSDWE 528
           P+ P  PC+   SAP A++   + L+D++++   WE
Sbjct: 89  PSPPPPPCEYQQSAPGASSDKLMTLVDLQKACGSWE 124


>SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 585 PRAPLAAGGS*RLKLGEAPLPIGQ*FLNINKSNGKSGGFR 466
           PR P+A   S  + LG A   +GQ  + +N+ N  +G F+
Sbjct: 54  PRTPVAPSTSPAVSLGPAAGGMGQGVMGMNQGNAMAGQFQ 93


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 166 TNHFNDFFY*R*E*YVKKRIASNNRCRYTFVFRIDDILART 44
           T+H++ +++   E Y++K   SNN+  +   F     L RT
Sbjct: 355 TDHYSRYYWMEAENYIRKEFCSNNQAMHNMTFNYLLSLFRT 395


>SB_37036| Best HMM Match : Cu_bind_like (HMM E-Value=5.5)
          Length = 125

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 118 KKRIASNNRCRYTF-VFRIDDILARTNEAGVRLDAG 14
           K+R +SNN  +Y    +RIDDI  R+     RLD G
Sbjct: 30  KRRASSNNPSKYLIDKYRIDDI-DRSGTTKTRLDRG 64


>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 319 AKANSSSLLCGRTNKKDLGLNSATGTALALALVRPPTAPLAPCQLNLSAPEATAFAVRLI 498
           + ++SSS     ++++D   +S    + A A  RPPT  L    +    P     + R +
Sbjct: 215 SSSSSSSSSSSSSSQEDTTSHSCHSPSQAPASPRPPTPDLGITGIGYGGP-----SQRQL 269

Query: 499 DVKESLSDW-ERGFTELQA 552
           D K  L +W +RG  E +A
Sbjct: 270 DKKYVLQNWFKRGVAEKKA 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,772
Number of Sequences: 59808
Number of extensions: 405927
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)