Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k18f
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04620.2 68418.m00464 aminotransferase class I and II family ...    28   4.5  
At5g04620.1 68418.m00465 aminotransferase class I and II family ...    28   4.5  
At4g39450.1 68417.m05582 expressed protein                             28   5.9  
At4g29330.1 68417.m04191 Der1-like family protein / degradation ...    28   5.9  

>At5g04620.2 68418.m00464 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 476

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = +1

Query: 337 SLLCGRTNKKDLGLNSATGTALALALVRPPTAPLAPCQL--NLSAPEATAFAVRLIDVKE 510
           SL+ G   K          +   +  +RPPT P   C+L   LSA   T    +LI    
Sbjct: 397 SLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALS 456

Query: 511 SLSDWERGFTEL 546
           S  D++   T +
Sbjct: 457 SCLDFDNTATHI 468


>At5g04620.1 68418.m00465 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 343

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = +1

Query: 337 SLLCGRTNKKDLGLNSATGTALALALVRPPTAPLAPCQL--NLSAPEATAFAVRLIDVKE 510
           SL+ G   K          +   +  +RPPT P   C+L   LSA   T    +LI    
Sbjct: 264 SLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALS 323

Query: 511 SLSDWERGFTEL 546
           S  D++   T +
Sbjct: 324 SCLDFDNTATHI 335


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 431 LHWRLVS*ICQLRKPPLLPFDLLML 505
           LHW LV+  CQ+ K PL    L ML
Sbjct: 289 LHWSLVTLFCQMHKIPLSTKYLAML 313


>At4g29330.1 68417.m04191 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 266

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 199 FFLQWTQFVL*VLFSA*EFSVIKNMVRGFYFLVLLVLHSLA 321
           F+L W    L V+F +     +  ++ G  +  L VLH LA
Sbjct: 152 FYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLA 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,470
Number of Sequences: 28952
Number of extensions: 278174
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)