Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k16r
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 3e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 46 4e-05
12_02_0911 + 24236374-24237582 34 0.091
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.1
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 2.6
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.6
09_02_0549 + 10485415-10486107 29 3.4
01_06_1162 + 35010414-35011106 29 4.5
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 28 6.0
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 28 6.0
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 28 7.9
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 55.6 bits (128), Expect = 3e-08
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Frame = -3
Query: 674 DAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESD 504
+++ EER+HA KL+ Y MRG +L VT L + P A+E AL LE
Sbjct: 132 ESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEKGD---ALYAMELALALEKL 188
Query: 503 VTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEF 324
V + + + S ND L D++ EFL+EQ + + ++ + L+++ H G +
Sbjct: 189 VNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVW 244
Query: 323 IFDKKLL 303
FD+KLL
Sbjct: 245 HFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 45.6 bits (103), Expect = 4e-05
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Frame = -3
Query: 674 DAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESD 504
+++ EER+HA KLI Y MRG +L VT L + P E G AL L
Sbjct: 164 ESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHP-----EKG-DALYGELLSACP 217
Query: 503 VTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEF 324
+ V C ND L D++ EFL+EQ + + ++ + L+++ H G +
Sbjct: 218 IYVFYSMVASRC----NDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVW 270
Query: 323 IFDKKLL 303
FD+KLL
Sbjct: 271 HFDQKLL 277
>12_02_0911 + 24236374-24237582
Length = 402
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -3
Query: 608 LTGSVTDLITYRAPANTSW--ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHL 441
L VT+L+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 440 VDYLSGEFLDEQYKGQRDL 384
D+LS +EQY G L
Sbjct: 208 DDFLSDACSNEQYSGDSSL 226
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 527 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 357
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 494 SIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM-DKHAALGEFIF 318
S++++ K C ++D + + +S E L+E TLK +M +K A+ G F+
Sbjct: 1356 SVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTFLL 1415
Query: 317 DKKL 306
++++
Sbjct: 1416 NEEI 1419
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 545 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 438
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>09_02_0549 + 10485415-10486107
Length = 230
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -2
Query: 594 NRPHHVQGPRKHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVRG 421
NR +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQ 156
Query: 420 IPRRTVQGPTRP 385
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>01_06_1162 + 35010414-35011106
Length = 230
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -2
Query: 594 NRPHHVQGPRKHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVRG 421
NR +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQ 156
Query: 420 IPRRTVQGPTRP 385
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 447 PPGRLFVRGIPRRTVQGPTRPRRQG-LDPQEDDGQTRRPRRVHL 319
PPG VR P++ Q P PRR+ P R P R HL
Sbjct: 118 PPGFAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHL 161
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 615 GKADRLRNRPHHVQGPRKHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 460
G + + ++P ++Q P +H P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 473 TCESSFNDYHLVDYLSGEFLDEQY-KGQRDLAGKASTL-KKMMDKHAALGEFI 321
TC+SSFND + + ++G E + K Q DL + + KK D+ + EF+
Sbjct: 401 TCDSSFNDKPIRETVAGPLGKELFEKEQEDLLSDLNDIPKKACDRR--INEFV 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,861
Number of Sequences: 37544
Number of extensions: 353493
Number of successful extensions: 992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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