Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k16r
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.16 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 575 RAPANTSWESGASALEHALKLESDVTNSI 489
           R P   SW S  + +  A KL+ ++ NSI
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 487 RMLLVTSLSSLRACSRADAPLSHDVFAGALYVMRSV 594
           R+LL++++  +  CS  +  L  D+F G   ++R V
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRGYNKLIRPV 45


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 597 RNRPHHVQGPRKHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPPG 439
           +++P H Q    H     +   +A+PQ  + + QQ P   Q  ++Q Q+   G
Sbjct: 806 QSQPPHQQ-LHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRG 857


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 384 RRQGLDPQEDDGQTRRPRRVHLRQETPRIE 295
           R+Q +DP   + Q  R RRV + +    +E
Sbjct: 96  RKQTIDPLSSNTQITRKRRVGIVENQYAVE 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 465  EQLQRLPPGRLFVRGIPR 412
            ++L++LP G LF++ + R
Sbjct: 1321 DRLRQLPEGSLFIKEVDR 1338


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = -2

Query: 396 PTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHVTP 268
           P   +R G    E+      P+R+      P + R    H TP
Sbjct: 622 PVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISCHTTP 664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,445
Number of Sequences: 438
Number of extensions: 4204
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)