Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k16f
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 58 6e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 3e-07
10_01_0026 - 351737-353443 31 0.97
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.0
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 29 3.9
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 5.2
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 5.2
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 6.8
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 9.0
05_03_0458 + 14280953-14281866,14281964-14282912 27 9.0
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.0
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 58.0 bits (134), Expect = 6e-09
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = +1
Query: 304 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 483
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 484 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSI 612
RG +L VT L + P A+E AL LE V +
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKL 193
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 337 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 507
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 508 TDLITYRAP 534
T L + P
Sbjct: 194 TPLTEFDHP 202
>10_01_0026 - 351737-353443
Length = 568
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 401 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAH---QPS 571
+P S S+ +A + SSL+ S +P P +S PP++ G ++ QPS
Sbjct: 4 SPESSPSSANSTTPSAPSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPS 63
Query: 572 STPSSWRVTSPTA 610
S SS T+P+A
Sbjct: 64 SESSSESTTTPSA 76
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 364 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 480
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 509 PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPTAS 613
PTSS T PPQ + G +P++T S PTA+
Sbjct: 43 PTSSSTPPPQRQEG---PRPAATSSLHETAGPTAA 74
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 530 PPQTRRGRAAHQPSSTPSSWRVTSPTASG 616
PP + R RA PSS PSS ++PTA+G
Sbjct: 33 PPPSARARARAGPSS-PSSSSPSTPTAAG 60
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 285 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 136
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 497 QAP*PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPT 607
Q+P P ++ T P T AA P + PS + SPT
Sbjct: 101 QSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPT 137
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 516 HHVQGPRKHVVGERRISPRAR 578
H+ GPR H+ G RR PRAR
Sbjct: 18 HYATGPRTHLPGPRR-KPRAR 37
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.5 bits (58), Expect = 9.0
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +2
Query: 353 SST*PWGLTS--RSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QA---P*PTS 517
S++ +G TS S R AP+ S +S T P SLTT S S + P P
Sbjct: 12 SASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPL 71
Query: 518 SRTGP--PQTRRGRAAHQPSSTPSSWRVTSPTAS 613
T P P T ++H P+ P TSP+AS
Sbjct: 72 QPTPPPLPPTTLSCSSH-PTPPPPPSPTTSPSAS 104
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 348 VNPVLSHGGLLLDRYGEPPRLREA 419
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,170
Number of Sequences: 37544
Number of extensions: 328017
Number of successful extensions: 967
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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