Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k15r
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   25   1.7  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         29   5.1  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 539 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 718
           C+   CS++  C  SC   GC L+    +         +    C+SR  G  CT S  G 
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281

Query: 719 G*KC 730
             KC
Sbjct: 282 DVKC 285


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 25.4 bits (53), Expect(2) = 1.7
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 605 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 522
           +++L++  +++   YC+     NGQ+IV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157



 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 524 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 372
           +R YF     L+M+G    ++  + +L L        S  R+  G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -3

Query: 440  LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMS---- 273
            L+ GST   S++ IA       +T L S  F       R Y   H T Y  YL +S    
Sbjct: 868  LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920

Query: 272  -TTTCNCNSRDRVV 234
             T  C  NSRDRV+
Sbjct: 921  CTQACRLNSRDRVL 934


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +3

Query: 402  SLIRGIGCGTELQSEVVVSVNDLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHG-VP 578
            S++     G E    V++ +N+  IV   +  K+    +      +++  +V ++   V 
Sbjct: 6471 SVVEAFEAG-ETSKPVMIPINEDKIVEDTETFKLLLSSIEPTVTVISNQTIVNIIDDDVI 6529

Query: 579  SLVNDQVVNYILDDGXXXXXXIFQALTDSTVVVA 680
             ++N  VVN I +DG        Q+LT    +++
Sbjct: 6530 VIINQTVVNIIDNDGKLSSSSTRQSLTSLMTILS 6563


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 504 KL*THHGRKLCQDHLQKLQPRSEAR 430
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -3

Query: 491 IMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFK 312
           ++ G Y  +++R ++  +  G+ T  SNER      V K    +   F   W    VYF 
Sbjct: 217 VITGLYSGVVHRLWHRKVP-GNQTTSSNERAKSKKRVLKMLVAIVLAFALCWLPYHVYFF 275

Query: 311 IHNTKY 294
           + N  Y
Sbjct: 276 LENYYY 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,984,745
Number of Sequences: 59808
Number of extensions: 453499
Number of successful extensions: 1256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)