Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k15r
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.45 
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    31   0.78 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    31   0.78 
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   2.4  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    28   5.5  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   5.5  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   5.5  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    27   9.6  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 596 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 498
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -3

Query: 722 NQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 576
           NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 292 NQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -3

Query: 722 NQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 576
           NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 293 NQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 55  PATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSALLPP 231
           P  S   P+A  S   ++++P  K  L+    +  + +F +L  WKN    V+ A++ P
Sbjct: 648 PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQKKAFEFL--WKNLAGSVVPAMMDP 700


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +1

Query: 55  PATSPSCPTAL----RSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 222
           P ++PS P  L    R+P++ T +   K S N    + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSI-DRKNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 223 L 225
           L
Sbjct: 60  L 60


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 704 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 588
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 704 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 588
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 596 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 498
           +++D +    +Y  KL + +G +   K+FPL F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,212
Number of Sequences: 28952
Number of extensions: 306822
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)