Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14r
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    29   4.6  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    29   4.6  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    29   4.6  
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 577 VPLVILFCLPIGGNLDLKIF-GLNFLY 654
           +PL+I  CL +G  L+ KI  G+N+LY
Sbjct: 52  IPLIITICLSMGIILNFKIVRGVNYLY 78


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 577 VPLVILFCLPIGGNLDLKIF-GLNFLY 654
           +PL+I  CL +G  L+ KI  G+N+LY
Sbjct: 36  IPLIITICLSMGIILNFKIVRGVNYLY 62


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 577 VPLVILFCLPIGGNLDLKIF-GLNFLY 654
           +PL+I  CL +G  L+ KI  G+N+LY
Sbjct: 52  IPLIITICLSMGIILNFKIVRGVNYLY 78


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 252 PSSFKLHVTNGMVLMEEKKNFTK*NLSKYLRCMLGAI 362
           P+ +K H+TN     +++KN  + N+SK+   ML AI
Sbjct: 445 PNDYKKHITNA----KKEKNENEPNISKFCNNMLAAI 477


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 585 GNFVLFTNWWEFRFKNLWTQFSVFKKKTNCLMSLILTTACA 707
           G  ++    W F+F  +  +F+   KK++ +M +I +  CA
Sbjct: 346 GKILMIEESWGFKFLGIVPKFNEGSKKSDIMMLIIDSVTCA 386


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 55  TTYHFLMALFKNYIKFSKFLLHCF 126
           TT+ F++  F  +  FS FL+H F
Sbjct: 245 TTHKFVLLFFSEFQNFSAFLIHLF 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,048
Number of Sequences: 27780
Number of extensions: 311830
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)