BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k14f (627 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 28 1.3 SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.7 SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 3.9 SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.1 SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 9.0 >SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 27.9 bits (59), Expect = 1.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 198 SRTFPASLTQKHRSMKSLVSKHSVNTERSRR 106 +RTFP SLT H + ++SKH ++ RR Sbjct: 1353 ARTFPESLTTYHLDLLLVLSKHPFLSKSWRR 1383 >SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1639 Score = 27.5 bits (58), Expect = 1.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 554 DSHACDSRCLHYVLPLVK 501 DS C+S +HYVL LVK Sbjct: 1441 DSEDCNSESIHYVLKLVK 1458 >SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1436 Score = 26.2 bits (55), Expect = 3.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 223 APNCIKWMLLLQENQCTVIND 285 APNC++ + L NQ +VI D Sbjct: 844 APNCVRLVTLATANQLSVIED 864 >SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 25.8 bits (54), Expect = 5.1 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 59 RNPCASRLQ*PVRNTNLRDRSVFTECL 139 +NP +S P+ + NLRD S F CL Sbjct: 367 QNPSSSSNSIPLISRNLRDFSFFKRCL 393 >SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr 2|||Manual Length = 667 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -2 Query: 404 ISHSFGTTSIDQSKHSSLFFILLMSYITSL 315 ++ F + + SK S++FF++ +S ITSL Sbjct: 312 LNMKFASKTKGFSKISNVFFVIFLSLITSL 341 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,460,234 Number of Sequences: 5004 Number of extensions: 47511 Number of successful extensions: 146 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 141 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 146 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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