Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14f
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   3.9  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   5.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   9.0  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 198  SRTFPASLTQKHRSMKSLVSKHSVNTERSRR 106
            +RTFP SLT  H  +  ++SKH   ++  RR
Sbjct: 1353 ARTFPESLTTYHLDLLLVLSKHPFLSKSWRR 1383


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 554  DSHACDSRCLHYVLPLVK 501
            DS  C+S  +HYVL LVK
Sbjct: 1441 DSEDCNSESIHYVLKLVK 1458


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 223 APNCIKWMLLLQENQCTVIND 285
           APNC++ + L   NQ +VI D
Sbjct: 844 APNCVRLVTLATANQLSVIED 864


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 59  RNPCASRLQ*PVRNTNLRDRSVFTECL 139
           +NP +S    P+ + NLRD S F  CL
Sbjct: 367 QNPSSSSNSIPLISRNLRDFSFFKRCL 393


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 404 ISHSFGTTSIDQSKHSSLFFILLMSYITSL 315
           ++  F + +   SK S++FF++ +S ITSL
Sbjct: 312 LNMKFASKTKGFSKISNVFFVIFLSLITSL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,234
Number of Sequences: 5004
Number of extensions: 47511
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)