Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14f
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   3.1  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   27   9.4  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       27   9.4  

>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 456  IQNNIDEIVAGCEQDFNQRQNIVEASAIAGMGIKVMMKAFNK--PKDIPSQVPPLTPG 623
            ++  +  I  G +   N+ Q++V  S        V +K   K  PKD  S VPP  PG
Sbjct: 1605 VEVKLSGIAFGGKSGINESQSLVRVSYSTDGSNYVFVKDDGKSSPKDFQSPVPPPVPG 1662


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 456  IQNNIDEIVAGCEQDFNQRQNIVEASAIAGMGIKVMMKAFNK--PKDIPSQVPPLTPG 623
            ++  +  I  G +   N+ Q++V  S          +K   K  PKD  S VPP  PG
Sbjct: 1347 VEVKLSGIAFGGKPGINESQSLVRVSYSTDGSNYAFVKDDGKSSPKDFQSSVPPPVPG 1404


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 95  RNTNLRDRSVFT-ECLLTSDFIDRCF 169
           R  N+R RS+   EC LT +F +RCF
Sbjct: 587 RCMNVRTRSLGVGECCLTDNFCERCF 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,243,045
Number of Sequences: 59808
Number of extensions: 379878
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)