Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14f
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   1.5  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    24   3.4  
Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protei...    23   6.0  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   7.9  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 211  VVCDFSYIPSVTHSKAPINEI 149
            +V D S+IPS TH +  I+ I
Sbjct: 1459 LVFDISFIPSTTHGRIDIDHI 1479


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -3

Query: 517 FCR---WLKSCSHPATISSILFCM 455
           FCR   WL+SCS  +++ ++ F M
Sbjct: 12  FCRDIVWLRSCSCHSSVCAVSFVM 35


>Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protein
           precursor protein.
          Length = 260

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 468 YYFVCIYSFV*TNLI 424
           YYFVC YSF  TN++
Sbjct: 210 YYFVCNYSF--TNIM 222


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 117 RSRRFVFRTGHCKREAQGFRSVK 49
           R++   F TG C+   QGFR+++
Sbjct: 813 RAQLLQFVTGSCRVPLQGFRALQ 835


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,027
Number of Sequences: 2352
Number of extensions: 12408
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)