Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14f
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       29   3.6  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical
           protein C25G4.5 protein.
          Length = 1263

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 301 DEHFKSDVI*DISKMKNSEECLD*SMDVVPKLCDIY*SYLKN*VSLNETVNTYKIIS 471
           D  F SDV   +S +KN+   L  S+D  P++ D   +YL   V     +  YKI+S
Sbjct: 312 DRFFTSDV--SVSLVKNTRALLTNSLDKKPRILD---NYLMLEVKDRPVIGRYKIMS 363


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 301 DEHFKSDVI*DISKMKNSEECLD*SMDVVPKLCDIY*SYLKN*VSLNETVNTYKIIS 471
           D  F SDV   +S +KN+   L  S+D  P++ D   +YL   V     +  YKI+S
Sbjct: 312 DRFFTSDV--SVSLVKNTRALLTNSLDKKPRILD---NYLMLEVKDRPVIGRYKIMS 363


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 404 ISHSFGTTSIDQSKHSSLFFILLMSYITSL 315
           I + FGT  I  SK   L+F+  ++YI +L
Sbjct: 382 IKYIFGTLKIQYSKSDGLYFLTDLNYIGNL 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,749
Number of Sequences: 27780
Number of extensions: 278811
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)