Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14f
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -1

Query: 243  PFNAI-WGIVSSSCATSRTFPASLTQKHRSMKSLVSKHSVNTERSRRFVFRT 91
            P N   W +VS+S    R F  +  Q     +  V  H+V       F F T
Sbjct: 1538 PINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVT 1589


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -1

Query: 243  PFNAI-WGIVSSSCATSRTFPASLTQKHRSMKSLVSKHSVNTERSRRFVFRT 91
            P N   W +VS+S    R F  +  Q     +  V  H+V       F F T
Sbjct: 1534 PINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVT 1585


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 527 LHYVLPLVKVLFTSSDYLVD-IILYVFTVSFKL 432
           LHY+L L+ +LFT    L + +++++F  +  L
Sbjct: 47  LHYLLALLYILFTFLALLGNGLVIWIFCAAKSL 79


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 456 IQNNIDEIVAGCEQDFNQRQNIVEASAIAGMGIKVMMKAFNKPKDIPSQV 605
           +Q+N++ +V  CEQD  Q        +   + ++   K  +K  D  SQ+
Sbjct: 319 LQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQHSQL 368


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -1

Query: 246 HPFNAIWGIVSSSCATSRTFPASLTQKHRSM 154
           H  + IWGI++        +P + T   + +
Sbjct: 344 HGASGIWGIIAIGLFADNPYPLNTTNGRKGL 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,701
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)