Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k14f
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    31   0.47 
At4g33720.1 68417.m04788 pathogenesis-related protein, putative ...    30   1.4  
At2g39680.1 68415.m04868 expressed protein                             28   4.4  
At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1) i...    28   5.8  

>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -3

Query: 511 RWLKSCSHPATISSILFCMYLQFRXXXXXXXNKINKYHTVSAQRPLISLNTPRCFSFCLC 332
           +W  +C+HP  + S   CM   F         +  K+H +  +R  + +N    F    C
Sbjct: 394 KWCSACTHPICLQSFYGCMDCDFILHQNCAGFRRMKWHVLHNERLTLVINEAEPFRCYAC 453


>At4g33720.1 68417.m04788 pathogenesis-related protein, putative
           similar to SP|P33154 Pathogenesis-related protein 1
           precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
           profile PF00188: SCP-like extracellular protein
          Length = 163

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 584 WLIESFHHDFDSHAC--DSRCLHY 519
           W+ E F +D+DS+ C  D +C HY
Sbjct: 99  WVDEQFDYDYDSNTCAWDKQCGHY 122


>At2g39680.1 68415.m04868 expressed protein 
          Length = 84

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -1

Query: 486 QRLSRRYYFVCIYSFV*TNL---IF*IRSINITQFRHNVH*SV*TLLAVFHFAYVLYHV 319
           QRLSR     CIYS     L   +  IRS  +T F   +      +   +H  Y+ YH+
Sbjct: 9   QRLSRSILLFCIYSNTYMGLKTYVSTIRSTRVTTFFTGIRLKHICISHFYHLEYLNYHL 67


>At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1)
           identical to pathogenesis-related protein 1 {Arabidopsis
           thaliana} GI:166805; contains an extracellular proteins
           SCP/Tpx-1/Ag5/PR-1/Sc7 signature  (PDOC00772)
          Length = 176

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 587 FWLIESFHHDFDSHAC--DSRCLHY 519
           +W+ E  ++D+DS+ C  D  C HY
Sbjct: 110 YWMTEKENYDYDSNTCGGDGVCGHY 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,084
Number of Sequences: 28952
Number of extensions: 248852
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)