Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   1.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   1.3  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   3.9  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   5.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.7  

>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 470 QKCFENKRVREIVGLSEPPENGSPGHGPRVPLW*RQYCPYTRWCSL-SLPSIIRLPI 303
           QK FE +++RE +      + G       VP++ R Y P+    +L  LP + ++P+
Sbjct: 106 QKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPV 162


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 347  LYRGNTVFTIRAHGARAQGSHSQGAPKDRQFLSHVYSQNIFVEHSTLFSQISNQKVLLFT 526
            L R + V   R HGA+ + SH    PK  Q+     S ++  ++ TL  Q+    VL + 
Sbjct: 989  LVRDHVVKVFRRHGAKERESHIL-FPKSSQYDKDQASVSLLDKNGTLL-QLPYDTVLPYA 1046

Query: 527  RN 532
            RN
Sbjct: 1047 RN 1048


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 234 GPIFLK-YTLQFLGLFMCNFEYMNYSMKFIPTFLKNCF*QS 115
           G +FL+ + L +  LF+ ++ Y  ++  F+P +++N   QS
Sbjct: 366 GKMFLQNFMLSYTALFLISYIYGPFAEYFVPHYIQNRMSQS 406


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = -2

Query: 267 LFQIVKKIITFGPIFLK-----YTLQFLGLFMC 184
           L+Q+ KKI+ FGP +        T  FL L MC
Sbjct: 523 LYQLEKKIVAFGPRYFNPKNNTPTNYFLALLMC 555


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 333 ISTLHNTVTYCKLFQCYFRKKVLFQIVKKIITFGPIFLKYTLQFLGL 193
           +S L   + +  LF C+ +  +L Q+ +   + G  F   TL  LGL
Sbjct: 732 LSFLQRPLGHLSLFSCFLQILLLIQLKQWQPSVGHNFFSVTLGLLGL 778


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +3

Query: 390 PVPRAPILRGLRKTDNFSHTFILKTFLSSTVH-FFHKSVIRRYYYLQGIYYAYNRRFCST 566
           PVP  P+ +  R+T +     +    +++ V   F  +   + Y L+ I        CS 
Sbjct: 166 PVPSVPVSKTKRRTKHKLAPVVEVPEITNEVSPKFTSTNDEQVYRLRSIRAGSPNSVCSF 225

Query: 567 ETRKKPLLKS*PKNQQHSNIINDILYHTVFDY 662
           +  + P  +  P   Q  ++ ND L H VFD+
Sbjct: 226 QF-EIPSTRP-PSLDQLIHLFNDFLRHPVFDF 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,056
Number of Sequences: 5004
Number of extensions: 65437
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)